v0.1.2.1

Fix the wrong installation of pysam > v0.15.4 that caused CIRCexplorer2 failure to read compressed SAM files and following errors like

scons: *** [samples/rep1/processings/circRNAs/CIRCexplorer2_bwa/back_spliced_junction.bed] Error -11

See also pysam issue #1013

v0.1.2

• added a patch solving DCC's issue #69
• fixed errors when setting non-default DCC parameters
• improved handling of empty files and errors generated by methods detecting no circRNAs
• improved the README
• removed some unused legacy code and dependency packages
• added a utility script to filter/select FASTQ reads

v0.1.1

Fixed circ_ids in gene annotation and linear reads on backsplice files. In the previous version the circ_ids in those files were composed with GFF coordinates (as in CirComPara1), which mismatched the BED coordinate format of the circ_ids in circRNA expression file.
Added notes and Alternative pipeline section to the README file.

v0.1

removed unused libraries from installation