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fulcrumgenomics / fgbio Public

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fix(codec): avoid MatchError on dovetail FR pairs with asymmetric isFrPair#1155

Merged

tfenne merged 4 commits into

mainfulcrumgenomics/fgbio:mainfrom

nh_fix-codec-matcherror-on-asymmetric-frpairfulcrumgenomics/fgbio:nh_fix-codec-matcherror-on-asymmetric-frpairCopy head branch name to clipboard

May 19, 2026

Conversation Commits4 (4)Checks Files changed

Merged

fix(codec): avoid MatchError on dovetail FR pairs with asymmetric isFrPair#1155
tfenne merged 4 commits into
mainfrom
nh_fix-codec-matcherror-on-asymmetric-frpair

Commits

Commits on May 19, 2026

fix(codec): avoid MatchError on dovetail FR pairs with asymmetric isFrPair

nh13
authored and
tfenne
committed
refactor(codec): delegate isPrimaryFrPair to htsjdk getPairOrientation
tfenne
committed
test(codec): pin dovetail isPrimaryFrPair outcome instead of just asserting symmetry
tfenne
committed
perf(codec): single-pass orderedPrimaryPairs via LinkedHashMap
tfenne
committed

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