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ont-artic: repoint consistently-broken NCBI SRA read URL at ENA + test schema regularization #1298

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Merged
mvdbeek merged 1 commit into from
Jul 15, 2026
Merged

ont-artic: repoint consistently-broken NCBI SRA read URL at ENA + test schema regularization #1298

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5 changes: 3 additions & 2 deletions ...-cov-2-variant-calling/sars-cov-2-ont-artic-variant-calling/ont-artic-variation-tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -19,12 +19,13 @@
- identifier: SRR12447380
class: File
filetype: fastqsanger.gz
location: "https://www.be-md.ncbi.nlm.nih.gov/Traces/sra-reads-be/fastq?acc=SRR12447380"
location: "https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR124/080/SRR12447380/SRR12447380_1.fastq.gz"
hashes:
- hash_function: SHA-1
hash_value: e26a9711e1d1201ed49cd3e98bbc0837f4c90533
hash_value: cd93c6dcbcf46b795d7cc2f41a81c9d87f8601d6
outputs:
annotated_softfiltered_variants:
class: Collection
attributes: {}
element_tests:
SRR12447380:
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