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Updating workflows/bacterial_genomics/bacterial_genome_annotation #538

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lldelisle merged 4 commits into
galaxyproject:mainfrom
clsiguret:bacterial-genome-annotation_update
Sep 27, 2024
Merged

Updating workflows/bacterial_genomics/bacterial_genome_annotation #538
lldelisle merged 4 commits into
galaxyproject:mainfrom
clsiguret:bacterial-genome-annotation_update

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@clsiguret

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I fixed the test for several outputs identified in #530.
Thanks 😃

@clsiguret

clsiguret commented Sep 27, 2024

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There is an error in the Comment PR:
Error: Unhandled error: HttpError: Validation Failed: {"resource":"IssueComment","code":"unprocessable","field":"data","message":"Body is too long (maximum is 65536 characters)"}

Is that why you said that "For bacterial_genome_annotation.ga_0 the log is too long" in #530, @lldelisle ?
How can I resolve this issue?

Thanks 😃

@lldelisle

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Hi,
In fact, the tests are not passing and usually, the report for the test failure is commented here but it is too long to be in a comment. So you need to get the workflow test manually on the github action.
Click on 'Details' on the right of the "Galaxy Workflow Tests for push and PR / Combine...".
Click on the top left on 'Summary'.
On the bottom of the page, click on All tool test results this will allow you to download a zip with inside a html with the workflow test result.
Then, you should be able to see what went wrong among your tests.

@lldelisle
lldelisle merged commit 8358582 into galaxyproject:main Sep 27, 2024
@lldelisle

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Thank you very mych @clsiguret

@clsiguret
clsiguret deleted the bacterial-genome-annotation_update branch September 27, 2024 16:18
@mvdbeek

mvdbeek commented Sep 27, 2024

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Attention: deployment skipped!

https://github.com/galaxyproject/iwc/actions/runs/11073779185

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3 participants