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Do not merge: Modify server #3

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Do not merge: Modify server #3

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aef270b
suppress new folder on server
Mar 15, 2022
4ef7b06
Merge branch 'two-fusions' of https://github.com/genophenoenvo/neon-e…
Mar 15, 2022
d4a3bd3
Merge branch 'two-fusions' of https://github.com/genophenoenvo/neon-e…
Mar 15, 2022
b497d46
Double check submissions from server
Jul 25, 2022
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4 changes: 3 additions & 1 deletion .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,10 @@
#Ignore csv files in the inputs folder
simple/*.csv
RFR/inputs_gcc/*.csv
RFR/inputs_weather/*/*.csv
RFR/inputs_weather/**/*.csv
RFR/PEG_RFR/**/*.csv
RFR/PEG_RFR0/**/*.csv
RFR/PEG_RFR2/**/*.csv
RFR/PEG_FUSION_0/**/*.csv
RFR/PEG_FUSION_1/**/*.csv

3 changes: 1 addition & 2 deletions RFR/06_submit_fusion.R
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Expand Up @@ -66,6 +66,5 @@ for(v in version){
"AWS_S3_ENDPOINT" = "ecoforecast.org")

aws.s3::put_object(file = file.path(".", v, "submissions", pred_filename),
bucket = "submissions")

bucket = "submissions")
}
3 changes: 2 additions & 1 deletion RFR/forecast_gcc.sh
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Expand Up @@ -5,4 +5,5 @@ Rscript 01_pull_gcc_weather.R
# python3 03_PEG_RFR_gcc_predictions_with_interpolation.py
# python3 04_PEG_RFR2_gcc_predictions_with_weather_variables.py
python3 05_PEG_FUSION_0_future_predictions.py
Rscript 06_submit_fusion.R
python3 05_PEG_FUSION_1_future_predictions.py
Rscript 06_submit_fusion.R
16 changes: 16 additions & 0 deletions RFR/test_submit.R
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@@ -0,0 +1,16 @@
.libPaths(c("/home/kristinariemer/r_libs/", .libPaths()))
### Submission script for the Fall 2021 EFI Challenge: Phenology
# remotes::install_github("eco4cast/neon4cast")
library(readr)
library(tidyr)
library(dplyr)

# loop to read, clean, score, validate, and submit prediction
version <- c("PEG_FUSION_0", "PEG_FUSION_1")

# Submit
Sys.setenv("AWS_DEFAULT_REGION" = "data",
"AWS_S3_ENDPOINT" = "ecoforecast.org")

aws.s3::put_object(file = file.path(".", version[1], "submissions", "phenology-2022-05-05-PEG_FUSION_0.csv"),
bucket = "submissions")