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adapted energy parameter fix from ViennaRNA

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@sjanssen2 sjanssen2 released this 28 Apr 21:32
80431b1
  • fixing a bug with latest gcc version regarding definition of openParen and closeParen pre-definitions leading to segfaults for whatever input. Thanks Vincent von Schelm for bringing this to my attention!
  • raising a warning about potential errors in free energy computation when using macrostate and energy parameters that violate the assumption that dl_energy + dr_energy == ext_mismatch_energy (this was true for Turner1999, but is no longer in Turner2004). See: #26
  • using a non deprecated method for number rounding, thus preventing multiple warnings to bug the user in front ends
  • raising a warning about potentially wrong energy computation if a) in alignment mode and b) in window mode. See: jlab/gapc#79