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1. Graffiti Graffiti Public

   A PyRosetta pipeline for transplanting immunogenic epitopes onto protein scaffolds, with secondary-structure-aware grafting, SASA-based ranking, and ProteinMPNN sequence design.

   Python 1

2. PyRosetta-Tools PyRosetta-Tools Public

   Python Script using set of functions to work with pyRosetta

   Python 3 1

3. EnzymARC EnzymARC Public

   A benchmark of active-site-disrupted decoy enzymes for evaluating EC number prediction models

   Python 1

4. izzetbiophysicist/GAPO izzetbiophysicist/GAPO Public

   Leveraging Protein Language Models and Structure-Based protein design with Genetic Algorithms

   Python 12 3

5. chavesejf/PBEE chavesejf/PBEE Public

   A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes

   Python 54 12

6. ThermoFormer ThermoFormer Public

   Encoder/Decoder implementation to translate mesophilic to thermophilic proteins

   Python