Releases: juglab/PlatyMatch
Releases · juglab/PlatyMatch
Release list
v0.0.3
New changes include:
- Increase
ransaciterations to 8000 - Added an additional case for fixed
yvector prediction (this emerges becauseR(x \times y) \neq Rx \times Ry - Estimation of accuracy is more robust (now, only takes keypoint ids and doesn't care about which rows they appear in)
v0.0.2
- Add three subpanels for detecting nuclei, estimating transform and evaluating metrics
- Next todo's include:
- Add
haussdarff distancemetric - Add tick and refresh buttons and icons for updating progress of actions on pushbuttons
- Add
v0.0.1
- This release includes the
javacode originally used for evaluating results at the time of the BIC workshop submission - Additionally, it includes the equivalent
pythoncode used and the first attempts of deploying it innapari - The entire
Platynereis datasetfor which results were reported in the publication is included as release assets here.- Directory
01-insituscontains confocal images of 12 independent specimens (labeled as02,04,05,06,07,08,10,11,12,13,14and16). Additionally nuclei centroids and locations of 12 keypoints are provided for each specimen - Directory
02-livecontains 12 static snapshots of a live embryo (again labeled as02,04,05,06,07,08,10,11,12,13,14and16), imaged under light sheet microscopy. Additionally nuclei centroids and locations of 12 keypoints are provided for each snapshot - Folder with the same name in the two modalities have equivalent development age and should be registered with each other
- All detections and keypoints are available in isotropic global coordinates as csv files are are specified in the column order
xyz
- Directory
- In
v0.0.2, thepythoncode gets further refactored