This repository contains code and data associated with modeling of viral dynamics (Simian/Human Immunodeficiency Virus and Human Immunodeficiency Virus) in submission @ Weinberger Lab at Gladstone Institutes and UC San Francisco, San Francisco
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"HIV-Bioreactor" : Mathematical models for bioreactor design requirements for emergence and amplifcation of DIPs in-vitro in
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"SIV-TIP-MCMC": Model parameterization by fitting virus-dynamics models to in-vivo viral kinetics from rhesus macaques using Bayesian inference with Markov chain Monte Carlo sampling. Also, scripts and data files for figures are included.
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"HIV-TIP": Simulation files for testing the therapeutic efficacy of HIV-TIPs in human individuals based on model-parameterization of SIV-TIP
- Each folder included a readme file with further information
- Contact: neha.khetan@gladstone.ucsf.edu , khetanneha@gmail.com