PROJECT_NAME

Bioinformatics analysis for [short project description].

Data type(s): [WGBS / snRNA-seq / WGS / multi-omics]
Study / cohort: [name]
Genome build: [hg38/hg19/etc]
Primary outputs: [DMRs/DEGs/modules/figures/etc]

---

Quick start

Clone

git clone https://github.com/[ORG_OR_USER]/[REPO].git
cd [REPO]

---

Repository structure

• data/ - raw + processed data + codebooks, data dictionaries, provenance notes (not commited)
• scripts/ — entrypoints + SLURM submit scripts
• analysis/ — downstream statistics/figures + configuration + sample sheets + generated logs
• docs/ — methods + workflow documentation
• results/ — generated outputs
• test/ — Test data and vignettes

---

Reproducibility standard

See docs/lab_reproducibility_standard.md.

---

License

MIT License (see LICENSE)