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refactor: function name correction #284

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Merged
NavandarM merged 1 commit into from
Nov 4, 2025
Merged

refactor: function name correction #284

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4 changes: 2 additions & 2 deletions src/npr/rules_dorado/02_basecall.smk
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ from io import StringIO
import time
import psutil

def gpu_and_is_free(util_cap=20, mem_cap_gb=400):
def gpu_and_ram_is_free(util_cap=20, mem_cap_gb=400):
"""
Check utilization of GPUs. return True if they are free.
util_cap is % of utilization below which we consider the GPU to be free.
Expand Down Expand Up @@ -52,7 +52,7 @@ rule basecall_02:
reference = f"--reference {config['info_dict']['organism_genome']}" if config['info_dict'].get('organism_genome') and "Nanopore 16S Barcoding Kit" not in config['info_dict']['parkour_protocol'] else ""
run:
_waiting_time = 600
while not gpu_and_is_free():
while not gpu_and_ram_is_free():
print(f"[yellow] Waiting {_waiting_time/60}min. for GPU and RAM to be free... [/yellow]")
time.sleep(_waiting_time)
shell(f"{params.cmd} basecaller \
Expand Down
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