chore: update pre-commit hooks

.pre-commit-config.yaml

@@ -7,14 +7,14 @@ exclude: ^(notebooks/misc_notebooks|notebooks/Ross_Ice_Shelf_inversion/|notebook
 
 repos:
   - repo: https://github.com/adamchainz/blacken-docs
-    rev: "1.18.0"
+    rev: "1.20.0"
     hooks:
       - id: blacken-docs
         additional_dependencies: [black==23.7.0]
         exclude: \.md
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.6.9"
+    rev: "v0.15.20"
     hooks:
       - id: ruff
         args: ["--fix", "--show-fixes"]
@@ -23,7 +23,7 @@ repos:
         exclude: \.md
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: "v5.0.0"
+    rev: "v6.0.0"
     hooks:
       - id: check-added-large-files
       - id: check-case-conflict
@@ -65,7 +65,7 @@ repos:
   #         # - data-science-types
 
   - repo: https://github.com/codespell-project/codespell
-    rev: "v2.3.0"
+    rev: "v2.4.2"
     hooks:
       - id: codespell
         name: codespell
@@ -74,7 +74,7 @@ repos:
         args: [--ignore-words-list, montaj]
 
   - repo: https://github.com/shellcheck-py/shellcheck-py
-    rev: "v0.10.0.1"
+    rev: "v0.11.0.1"
     hooks:
       - id: shellcheck
 
@@ -88,13 +88,13 @@ repos:
         exclude: .pre-commit-config.yaml
 
   - repo: https://github.com/abravalheri/validate-pyproject
-    rev: "v0.20.2"
+    rev: "v0.25"
     hooks:
       - id: validate-pyproject
         additional_dependencies: ["validate-pyproject-schema-store[all]"]
 
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: "0.29.3"
+    rev: "0.37.4"
     hooks:
       - id: check-dependabot
       - id: check-github-workflows

README.md

@@ -2,7 +2,7 @@
 
 Here we present a gravity inversion algorithm for modelling bathymetry. This is a non-linear geometric regularized least-squares inversion. Pre-existing bathymetry measurements can be used to constrain the inversion, and a Bayesian approach, via Monte Carlo simulation, is used to estimate uncertainties and sensitivity of the inversion to the various input data and parameters.
 
-The inversion code in `RIS_gravity_inversion` has mostly been migrated to a separate Python package, [Invert4Geom](https://github.com/mdtanker/invert4geom), while some specific functions for the synthetic tests and specific bathymetry applications are retained here. 
+The inversion code in `RIS_gravity_inversion` has mostly been migrated to a separate Python package, [Invert4Geom](https://github.com/mdtanker/invert4geom), while some specific functions for the synthetic tests and specific bathymetry applications are retained here.
 
 Detailed synthetic tests applied to Antarctic bathymetry data as part of a [manuscript submitted to The Cryosphere](https://egusphere.copernicus.org/preprints/2025/egusphere-2025-2380/) have been moved to the following repository: [https://github.com/mdtanker/synthetic_bathymetry_inversion](https://github.com/mdtanker/synthetic_bathymetry_inversion)
 

plotting/tmp.txt

@@ -2,4 +2,4 @@
 9.698970004336019 a 5000
 10.380211241711606 a 24000
 11.02938377768521 a 107000
-11.681241237375588 a 480000
+11.681241237375588 a 480000

src/RIS_gravity_inversion/gravity_processing.py

@@ -790,9 +790,9 @@ def interp1d_windows(
     **kwargs,
 ):
     if line_col is not None:
-        assert (
-            len(df[line_col].unique()) <= 1
-        ), "Warning: provided more than 1 flight line"
+        assert len(df[line_col].unique()) <= 1, (
+            "Warning: provided more than 1 flight line"
+        )
 
     if isinstance(to_interp, str):
         to_interp = [to_interp]
@@ -835,9 +835,9 @@ def interp1d(
 ):
     """ """
     if line_col is not None:
-        assert (
-            len(df[line_col].unique()) <= 1
-        ), "Warning: provided more than 1 flight line"
+        assert len(df[line_col].unique()) <= 1, (
+            "Warning: provided more than 1 flight line"
+        )
 
     if isinstance(to_interp, str):
         to_interp = [to_interp]
@@ -1025,7 +1025,7 @@ def calculate_misties(
         past_mistie_col = None
     else:
         mistie_col = f"mistie_{len(cols)}"
-        past_mistie_col = f"mistie_{len(cols)-1}"
+        past_mistie_col = f"mistie_{len(cols) - 1}"
         log.info("Previous mistie column: %s", past_mistie_col)
 
     log.info("New mistie column: %s", mistie_col)
@@ -1439,8 +1439,8 @@ def iterative_line_levelling(
             data_col = starting_data_col
             mistie_col = starting_mistie_col
         else:
-            data_col = f"{levelled_data_prefix}_{i-1}"
-            mistie_col = f"{mistie_prefix}_{i-1}"
+            data_col = f"{levelled_data_prefix}_{i - 1}"
+            mistie_col = f"{mistie_prefix}_{i - 1}"
 
         # with inv_utils.HiddenPrints():
         df, ints = level_lines(
@@ -1532,8 +1532,8 @@ def iterative_levelling_alternate(
             data_col = starting_data_col
             mistie_col = starting_mistie_col
         else:
-            data_col = f"{levelled_data_prefix}_{i-1}t"
-            mistie_col = f"{mistie_prefix}_{i-1}t"
+            data_col = f"{levelled_data_prefix}_{i - 1}t"
+            mistie_col = f"{mistie_prefix}_{i - 1}t"
 
         # level lines to ties
         df, ints = level_lines(

src/RIS_gravity_inversion/utils.py

@@ -273,7 +273,7 @@ def round_to_input(num, multiple):
             plt.axvline(
                 forward_df.forward_total.max() * p,
                 color=col[i],
-                label=f"{p*100}%",
+                label=f"{p * 100}%",
             )
         plt.xlabel("grav")
         plt.ylabel("count")