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Striped Unifrac C++ implementation #1645

Striped Unifrac C++ implementation

Striped Unifrac C++ implementation #1645

Triggered via pull request July 15, 2026 10:22
Status Failure
Total duration 49m 22s
Artifacts 1

rworkflows.yml

on: pull_request
Matrix: rworkflows
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28 errors, 18 warnings, and 1 notice
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[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1784110981912,"y":0},{"x":1784110986912,"y":0},{"x":1784110991898,"y":0},{"x":1784110996896,"y":0},{"x":1784111001900,"y":0},{"x":1784111006898,"y":0},{"x":1784111011898,"y":0},{"x":1784111016899,"y":0},{"x":1784111021904,"y":0},{"x":1784111026908,"y":0},{"x":1784111031898,"y":0},{"x":1784111036900,"y":0},{"x":1784111041902,"y":0},{"x":1784111046908,"y":0},{"x":1784111051898,"y":0},{"x":1784111056903,"y":0},{"x":1784111061907,"y":0},{"x":1784111066898,"y":0},{"x":1784111071913,"y":0},{"x":1784111076899,"y":0},{"x":1784111081909,"y":0},{"x":1784111086897,"y":0},{"x":1784111091904,"y":0},{"x":1784111096912,"y":0},{"x":1784111101903,"y":0},{"x":1784111106912,"y":0},{"x":1784111111898,"y":0},{"x":1784111116897,"y":0},{"x":1784111121898,"y":0},{"x":1784111126897,"y":0},{"x":1784111131901,"y":0},{"x":1784111136899,"y":0},{"x":1784111141897,"y":0},{"x":1784111146911,"y":0},{"x":1784111151911,"y":0},{"x":1784111156898,"y":0},{"x":1784111161899,"y":0},{"x":1784111166911,"y":0},{"x":1784111171897,"y":0},{"x":1784111176905,"y":0},{"x":1784111181899,"y":0},{"x":1784111186911,"y":0},{"x":1784111191912,"y":0},{"x":1784111196909,"y":0},{"x":1784111201905,"y":0},{"x":1784111206902,"y":0},{"x":1784111211898,"y":0},{"x":1784111216900,"y":0},{"x":1784111221899,"y":0},{"x":1784111226904,"y":0},{"x":1784111231897,"y":0},{"x":1784111236911,"y":0},{"x":1784111241899,"y":0},{"x":1784111246897,"y":0},{"x":1784111251904,"y":0},{"x":1784111256911,"y":0},{"x":1784111261897,"y":0},{"x":1784111266899,"y":0},{"x":1784111271898,"y":0},{"x":1784111276898,"y":0},{"x":1784111281906,"y":0},{"x":1784111286902,"y":0},{"x":1784111291896,"y":0},{"x":1784111296898,"y":0},{"x":1784111301898,"y":0},{"x":1784111306898,"y":0},{"x":1784111311898,"y":0},{"x":1784111316898,"y":0},{"x":1784111321896,"y":0},{"x":1784111326897,"y":0},{"x":1784111331897,"y":0},{"x":1784111336907,"y":0},{"x":1784111341899,"y":0},{"x":1784111346907,"y":0},{"x":1784111351898,"y":0},{"x":1784111356904,"y":0},{"x":1784111361898,"y":0},{"x":1784111366906,"y":0},{"x":1784111371897,"y":0},{"x":1784111376899,"y":0},{"x":1784111381897,"y":0},{"x":1784111386899,"y":0},{"x":1784111391910,"y":0},{"x":1784111396898,"y":0},{"x":1784111401910,"y":0},{"x":1784111406898,"y":0},{"x":1784111411897,"y":0},{"x":1784111416897,"y":0},{"x":1784111421898,"y":0},{"x":1784111426906,"y":0},{"x":1784111431902,"y":0},{"x":1784111436899,"y":0},{"x":1784111441901,"y":0},{"x":1784111446908,"y":0},{"x":1784111451900,"y":0},{"x":1784111456899,"y":0},{"x":1784111461911,"y":0},{"x":1784111466898,"y":0},{"x":1784111471913,"y":0},{"x":1784111476909,"y":0},{"x":1784111481907,"y":0},{"x":1784111486897,"y":0},{"x":1784111491898,"y":0},{"x":1784111496897,"y":0},{"x":1784111501903,"y":0},{"x":1784111506897,"y":0},{"x":1784111511907,"y":0},{"x":1784111516907,"y":0},{"x":1784111521905,"y":0},{"x":1784111526900,"y":0},{"x":1784111531899,"y":0},{"x":1784111536896,"y":0},{"x":1784111541904,"y":0},{"x":1784111546897,"y":0},{"x":1784111551913,"y":0},{"x":1784111556898,"y":0},{"x":1784111561903,"y":0},{"x":1784111566901,"y":0},{"x":1784111571900,"y":0},{"x":1784111576900,"y":0},{"x":1784111581898,"y":0},{"x":1784111586898,"y":0},{"x":1784111591896,"y":0},{"x":1784111596900,"y":0},{"x":1784111601899,"y":0},{"x":1784111606907,"y":0},{"x":1784111611898,"y":0},{"x":1784111616911,"y":0},{"x":1784111621898,"y":0},{"x":1784111626898,"y":0},{"x":1784111631900,"y":0},{"x":1784111636897,"y":0},{"x":1784111641897,"y":0},{"x":1784111646900,"y":0},{"x":1784111651897,"y":0},{"x":1784111656898,"y":0},{"x":1784111661898,"y":0},{"x":1784111666897,"y":0},{"x":1784111671897,"y":0},{"x":1784111676898,"y":0},{"x":1784111681897,"y":0},{"x":1784111686900,"y":0},{"x":1784111691904,"y":0},{"x":1784111696899,"y":0},{"x":1784111701899,"y":0},{"x":1784111706905,"y":0},{"x":1784111711903,"y":0},{"x":1784111716900,"y":0},{"x":1784111721897,"y":0},{
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1784110981912,"y":2814.7265625},{"x":1784110986912,"y":2831.3203125},{"x":1784110991898,"y":2829.7109375},{"x":1784110996896,"y":2885.93359375},{"x":1784111001900,"y":2870.45703125},{"x":1784111006898,"y":2854.90234375},{"x":1784111011898,"y":2870.1796875},{"x":1784111016899,"y":2821.68359375},{"x":1784111021904,"y":2854.359375},{"x":1784111026908,"y":2978.98046875},{"x":1784111031898,"y":2980.05078125},{"x":1784111036900,"y":2888.6953125},{"x":1784111041902,"y":2978.015625},{"x":1784111046908,"y":3118.93359375},{"x":1784111051898,"y":2860.91015625},{"x":1784111056903,"y":2966.5703125},{"x":1784111061907,"y":3024.82421875},{"x":1784111066898,"y":3044.75},{"x":1784111071913,"y":3056.1875},{"x":1784111076899,"y":3054.19921875},{"x":1784111081909,"y":3131.6796875},{"x":1784111086897,"y":3214.66796875},{"x":1784111091904,"y":3369.53515625},{"x":1784111096912,"y":3277.8984375},{"x":1784111101903,"y":3261.4296875},{"x":1784111106912,"y":3511.71484375},{"x":1784111111898,"y":3558.8515625},{"x":1784111116897,"y":3517.54296875},{"x":1784111121898,"y":3599.1875},{"x":1784111126897,"y":3603.67578125},{"x":1784111131901,"y":3517.43359375},{"x":1784111136899,"y":3440.34765625},{"x":1784111141897,"y":3634.16015625},{"x":1784111146911,"y":3344.04296875},{"x":1784111151911,"y":3636.2265625},{"x":1784111156898,"y":4104.6171875},{"x":1784111161899,"y":4381.578125},{"x":1784111166911,"y":3727.828125},{"x":1784111171897,"y":4217.74609375},{"x":1784111176905,"y":3859.328125},{"x":1784111181899,"y":3532.19921875},{"x":1784111186911,"y":4053.87109375},{"x":1784111191912,"y":3539.97265625},{"x":1784111196909,"y":4460.53515625},{"x":1784111201905,"y":4466.26953125},{"x":1784111206902,"y":4817.921875},{"x":1784111211898,"y":3223.13671875},{"x":1784111216900,"y":3708.2265625},{"x":1784111221899,"y":3547.54296875},{"x":1784111226904,"y":3101.5546875},{"x":1784111231897,"y":3150.90234375},{"x":1784111236911,"y":3302.640625},{"x":1784111241899,"y":3219.36328125},{"x":1784111246897,"y":3353.3515625},{"x":1784111251904,"y":3396.78515625},{"x":1784111256911,"y":3306.82421875},{"x":1784111261897,"y":3093.95703125},{"x":1784111266899,"y":3624.04296875},{"x":1784111271898,"y":4024.73828125},{"x":1784111276898,"y":3093.203125},{"x":1784111281906,"y":3570.3671875},{"x":1784111286902,"y":3163.19921875},{"x":1784111291896,"y":3680.25390625},{"x":1784111296898,"y":2953.03125},{"x":1784111301898,"y":3007.93359375},{"x":1784111306898,"y":3038.4140625},{"x":1784111311898,"y":3189.12109375},{"x":1784111316898,"y":3377.3046875},{"x":1784111321896,"y":3305.28515625},{"x":1784111326897,"y":3415.1796875},{"x":1784111331897,"y":3194.21875},{"x":1784111336907,"y":3410.13671875},{"x":1784111341899,"y":3359.58984375},{"x":1784111346907,"y":3917.12109375},{"x":1784111351898,"y":4308.29296875},{"x":1784111356904,"y":3227.05859375},{"x":1784111361898,"y":3772.76171875},{"x":1784111366906,"y":3370.91796875},{"x":1784111371897,"y":3893.8046875},{"x":1784111376899,"y":3331.40625},{"x":1784111381897,"y":3906.52734375},{"x":1784111386899,"y":4139.8046875},{"x":1784111391910,"y":4200.79296875},{"x":1784111396898,"y":4194.9140625},{"x":1784111401910,"y":4219.56640625},{"x":1784111406898,"y":3150.62109375},{"x":1784111411897,"y":3148.6484375},{"x":1784111416897,"y":3483.796875},{"x":1784111421898,"y":3383.640625},{"x":1784111426906,"y":3288.28515625},{"x":1784111431902,"y":3434.69140625},{"x":1784111436899,"y":3222.515625},{"x":1784111441901,"y":3438.92578125},{"x":1784111446908,"y":3342.71484375},{"x":1784111451900,"y":3866.4609375},{"x":1784111456899,"y":4204.7890625},{"x":1784111461911,"y":3284.89453125},{"x":1784111466898,"y":3543.6484375},{"x":1784111471913,"y":4069.12109375},{"x":1784111476909,"y":3756.63671875},{"x":1784111481907,"y":3861.25390625},{"x":1784111486897,"y":3269.171875},{"x":1784111491898,"y":3528.26171875},{"x":1784111496897,"y":4073.2
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
windows-latest (auto)
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1784110981912,"y":18.928653574172586},{"x":1784110986912,"y":26.765319296851725},{"x":1784110991898,"y":16.266560414383903},{"x":1784110996896,"y":19.0001495289837},{"x":1784111001900,"y":17.78412729691118},{"x":1784111006898,"y":14.207623117825374},{"x":1784111011898,"y":6.7675159235668785},{"x":1784111016899,"y":6.7739204064352245},{"x":1784111021904,"y":9.703185090227787},{"x":1784111026908,"y":21.863013698630137},{"x":1784111031898,"y":21.81519138755981},{"x":1784111036900,"y":20.25739512146456},{"x":1784111041902,"y":15.620669174420906},{"x":1784111046908,"y":14.836413956706535},{"x":1784111051898,"y":24.390121473747616},{"x":1784111056903,"y":14.750938920735324},{"x":1784111061907,"y":10.10799781018265},{"x":1784111066898,"y":11.792476270933758},{"x":1784111071913,"y":20.29562534215896},{"x":1784111076899,"y":7.950353902901007},{"x":1784111081909,"y":10.48450759818433},{"x":1784111086897,"y":14.371909000989119},{"x":1784111091904,"y":17.080530273051046},{"x":1784111096912,"y":27.412280701754387},{"x":1784111101903,"y":18.791612839113583},{"x":1784111106912,"y":26.626248571286588},{"x":1784111111898,"y":27.37150228219885},{"x":1784111116897,"y":26.82259268474745},{"x":1784111121898,"y":31.657420249653264},{"x":1784111126897,"y":47.75845841383068},{"x":1784111131901,"y":50.5759682224429},{"x":1784111136899,"y":47.68911712423464},{"x":1784111141897,"y":46.110262600384296},{"x":1784111146911,"y":45.2188086535612},{"x":1784111151911,"y":44.20651797636121},{"x":1784111156898,"y":51.44796380090497},{"x":1784111161899,"y":52.24035608308605},{"x":1784111166911,"y":51.476124430354666},{"x":1784111171897,"y":53.07098381070984},{"x":1784111176905,"y":48.33928217330954},{"x":1784111181899,"y":42.91614829559592},{"x":1784111186911,"y":38.81591941536639},{"x":1784111191912,"y":37.682878608145515},{"x":1784111196909,"y":50.85091560509554},{"x":1784111201905,"y":51.09068322981366},{"x":1784111206902,"y":52.290019394301055},{"x":1784111211898,"y":32.62885056325391},{"x":1784111216900,"y":27.69390684551799},{"x":1784111221899,"y":26.068333499352526},{"x":1784111226904,"y":26.448898787428853},{"x":1784111231897,"y":19.33399602385686},{"x":1784111236911,"y":24.08802537668517},{"x":1784111241899,"y":30.580268880980626},{"x":1784111246897,"y":26.805251641137858},{"x":1784111251904,"y":27.251950116758582},{"x":1784111256911,"y":26.63486384416617},{"x":1784111261897,"y":25.85629281464073},{"x":1784111266899,"y":28.905593195193113},{"x":1784111271898,"y":27.531296945418127},{"x":1784111276898,"y":28.193788819875778},{"x":1784111281906,"y":28.455527350554977},{"x":1784111286902,"y":27.986703711053778},{"x":1784111291896,"y":27.91232986389111},{"x":1784111296898,"y":25.269110570960862},{"x":1784111301898,"y":16.102828272821835},{"x":1784111306898,"y":16.79960366608868},{"x":1784111311898,"y":15.083354068176163},{"x":1784111316898,"y":27.303872889771597},{"x":1784111321896,"y":25.44947457542706},{"x":1784111326897,"y":26.933174815475308},{"x":1784111331897,"y":26.59146640510054},{"x":1784111336907,"y":27.062804817358415},{"x":1784111341899,"y":25.156257812890644},{"x":1784111346907,"y":28.954781319495922},{"x":1784111351898,"y":27.567540474161696},{"x":1784111356904,"y":26.251544353842355},{"x":1784111361898,"y":27.36915841088762},{"x":1784111366906,"y":27.23456790123457},{"x":1784111371897,"y":27.955542264752793},{"x":1784111376899,"y":24.691910157026438},{"x":1784111381897,"y":28.66207306796213},{"x":1784111386899,"y":26.97296218696997},{"x":1784111391910,"y":27.59658558247397},{"x":1784111396898,"y":30.551259665752056},{"x":1784111401910,"y":26.341918993314984},{"x":1784111406898,"y":25.906450320512818},{"x":1784111411897,"y":21.25335187208263},{"x":1784111416897,"y":25.803062143500448},{"x":1784111421898,"y":26.403940886699505},{"x":1784111426906,"y":25.85613877673097},{"x":1784111431902,"y":27.4079913287678},{"x
windows-latest (auto)
AxiosError: Request failed with status code 403
windows-latest (auto)
[Workflow Telemetry] AxiosError
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
The deploy step encountered an error: The process '/usr/bin/git' failed with exit code 128 ❌
ubuntu-latest (auto)
$GITHUB_STEP_SUMMARY upload aborted, supports content up to a size of 1024k, got 1434k. For more information see: https://docs.github.com/actions/using-workflows/workflow-commands-for-github-actions#adding-a-markdown-summary
macOS-latest (auto)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, catchpoint/workflow-telemetry-action@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
macOS-latest (auto)
The following taps are not trusted: aws/tap Homebrew is currently ignoring formulae, casks and commands from these taps because tap trust is required. Untap them with: brew untap aws/tap Trust specific formulae, casks and commands with: brew trust --formula <user>/<tap>/<formula> brew trust --cask <user>/<tap>/<cask> brew trust --command <user>/<tap>/<command> Whole-tap trust is broader and includes all current and future formulae, casks and commands from the listed taps. Trust whole taps with: brew trust aws/tap To disable trust checks: export HOMEBREW_NO_REQUIRE_TAP_TRUST=1 This is not recommended and will be removed in a later release. For more information, see: https://docs.brew.sh/Tap-Trust
macOS-latest (auto)
imagemagick@6 has been deprecated because it is end of life and only receives security updates! It will be disabled on 2029-04-01.
macOS-latest (auto)
The following taps are not trusted: aws/tap Homebrew is currently ignoring formulae, casks and commands from these taps because tap trust is required. Untap them with: brew untap aws/tap Trust specific formulae, casks and commands with: brew trust --formula <user>/<tap>/<formula> brew trust --cask <user>/<tap>/<cask> brew trust --command <user>/<tap>/<command> Whole-tap trust is broader and includes all current and future formulae, casks and commands from the listed taps. Trust whole taps with: brew trust aws/tap To disable trust checks: export HOMEBREW_NO_REQUIRE_TAP_TRUST=1 This is not recommended and will be removed in a later release. For more information, see: https://docs.brew.sh/Tap-Trust
windows-latest (auto)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, catchpoint/workflow-telemetry-action@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
ubuntu-latest (auto)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, actions/upload-artifact@v4, catchpoint/workflow-telemetry-action@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
ubuntu-latest (auto): inst/scripts/prepare_ibdmdb.R#L52
[lintr] Indentation should be 4 spaces but is 8 spaces.
ubuntu-latest (auto): inst/scripts/prepare_ibdmdb.R#L51
[lintr] Indentation should be 2 spaces but is 4 spaces.
ubuntu-latest (auto): inst/scripts/prepare_ibdmdb.R#L47
[lintr] Lines should not be more than 80 characters. This line is 86 characters.
ubuntu-latest (auto): inst/scripts/prepare_ibdmdb.R#L27
[lintr] Lines should not be more than 80 characters. This line is 82 characters.
ubuntu-latest (auto): inst/scripts/prepare_ibdmdb.R#L25
[lintr] Lines should not be more than 80 characters. This line is 84 characters.
ubuntu-latest (auto): inst/scripts/prepare_ibdmdb.R#L4
[lintr] Remove commented code.
ubuntu-latest (auto): inst/scripts/import.R#L25
[lintr] Remove trailing whitespace.
ubuntu-latest (auto): inst/scripts/import.R#L19
[lintr] Indentation should be 2 spaces but is 4 spaces.
ubuntu-latest (auto): inst/scripts/import.R#L15
[lintr] Indentation should be 4 spaces but is 8 spaces.
ubuntu-latest (auto): inst/scripts/import.R#L14
[lintr] Indentation should be 2 spaces but is 4 spaces.
ubuntu-latest (auto)
Deployment failed! ❌

Artifacts

Produced during runtime
Name Size Digest
Linux-biocversion-devel-r-auto-results
19.3 MB
sha256:d1ce716618dca043699e98ff15ca46b8748ee79238d1742453397813fbf680a4