Version 2.0.0: "The DEG Update"

November 15th, 2025: "The DEG update"

• Added assay argument to SetDEGs function
• Added assay and saveAssay argument to FilterDEGs function to specify which assay to filter and what to save filtered assay as
• Added assay argument to PlotMA to specify which DEG slot to plot
• Added PlotVolcano function for direct volcano plotting functionality
• Added FindHVDEGs to intersect DEGs with HVGs calculated during EDA functions
• Added GenSave function to save save pheatmap objects in a manner similar to ggplpot2::ggsave()
• Renamed eigencorr, ordcorr, and distanceHeatmap functions to PlotEigenCorr, PlotOrdCorr, and PlotDistances respectively to match other plotting function name conventions
• Replaced Pasilla dataset demo with Snail1 KO dataset from Matsuri et al., 2018