v1.0.0-beta

Pre-release beta for NF_MetagenomeSeq workflow

This workflow is an extension of the previously available Illumina Metagenomics Nextflow Workflow which adds support for low processing as well as data from Oxford Nanopore sequencers.

For a full list of changes, see the CHANGELOG.md

Only some of the approaches to running the workflow have been fully end-to-end tested for this pre-release:

1. Illumina low biomass data with paired-end FASTQ input
2. Nanopore low biomass data with multiple FASTQ input per sample
3. Nanopore low biomass data with single FASTQ input per sample

This version of the workflow doesn't always deal well with sparse data and will generate errors for processes that are passed empty input files. We recommend running the workflow with the --errorStrategy "ignore" parameter as a work-around to allow the full workflow to finish even when some processes fail for samples with insufficient data.

For a list of current known issues, check the Issues tab