Generate summary statistics (both textual and graphical) of sequence data.
This version no longer includes a PCA plot because no conda package exists
for the previous implementation (perl Statistics::PCA)
Clone this repo in your Galaxy Tools directory:
git clone https://github.com/naturalis/galaxy-tool-prinseq-sequence-analysis
Make sure the script is executable:
chmod 755 galaxy-tool-prinseq-sequence-analysis/prinseq_analyze.sh
Append the file tool_conf.xml:
<tool file="/path/to/Tools/galaxy-tool-prinseq-sequence-analysis/prinseq_analyze.xml" />
Depending on your setup the ansible.builtin.git module could be used.
Install the tool by including the following in your dedicated *.yml file:
- repo: https://github.com/naturalis/galaxy-tool-prinseq-sequence-analysis
prinseq_analyze.xml
version: master