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nf-core / ampliseq Public

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Fork 157
Star 254

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Issues 18
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Add abundance metrics#1025

Merged

d4straub merged 13 commits into

nf-core:devnf-core/ampliseq:devfrom

d4straub:add-abundance-metricsd4straub/ampliseq:add-abundance-metricsCopy head branch name to clipboard

Jul 3, 2026

Conversation Commits13 (13)Checks Files changed

Merged

Add abundance metrics#1025
d4straub merged 13 commits into
nf-core:devfrom
d4straub:add-abundance-metrics

Commits

Commits on Jul 1, 2026

add abundance metrics
d4straub
committed
update docs
d4straub
committed
fix linting
d4straub
committed

Commits on Jul 2, 2026

output abundances per sample in one file, optimise scatter plot
d4straub
committed
update CHANGELOG and docs
d4straub
committed
update tests/pplace_sheet.nf.test.snap
d4straub
committed
output params string in md5sum_version.txt
d4straub
committed
run some abundance metrics without FP and FN
d4straub
committed
add --expected_sequences_mismatches
d4straub
committed
fix typo
d4straub
committed

Commits on Jul 3, 2026

omit md5sum in output folder due to issues with maintenance and CI tests
d4straub
committed
exclude files with unstable md5sum from snap
d4straub
committed
Apply suggestions from code review

d4straub
and
erikrikarddaniel
authored

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