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nf-core / ampliseq Public

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Fork 157
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Issues 18
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Adding ONT read support for ampliseq#1026

Merged

d4straub merged 17 commits into

nf-core:devnf-core/ampliseq:devfrom

d4straub:add-nanopore-analysisd4straub/ampliseq:add-nanopore-analysisCopy head branch name to clipboard

Jul 14, 2026

Conversation Commits17 (17)Checks Files changed

Merged

Adding ONT read support for ampliseq#1026
d4straub merged 17 commits into
nf-core:devfrom
d4straub:add-nanopore-analysis

Commits

Commits on Jul 6, 2026

add chopper, porechop, and savont
d4straub
committed
fix linting
d4straub
committed
use toSortedList() instead of toList()
d4straub
committed
update CHANGELOG and CITATIONS
d4straub
committed
add read count check after chopper
d4straub
committed
amend output docs for Savont
d4straub
committed

Commits on Jul 10, 2026

update tests and add savont.nf.test.snap
d4straub
committed
generate chopper and savont read count stats
d4straub
committed
add cutadapt to test_savont
d4straub
committed
update .snap with cutadapt and additional stats
d4straub
committed
re-order .snap to fix tests
d4straub
committed
preset for ITSXRust and amend docs
d4straub
committed
fix missing line in output docu
d4straub
committed

Commits on Jul 13, 2026

add porechop_abi, chopper, and savont to summary report
d4straub
committed
fix summary report input for porechop_abi
d4straub
committed
reduce script length to aloow parsing with NXF_VER=25.10.4
d4straub
committed
adjust channel names, typos, rm todos
d4straub
committed

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