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Better explain --truncq / truncQ#914

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d4straub merged 4 commits into
nf-core:devfrom
d4straub:reviewer-2-15-0
Sep 29, 2025
Merged

Better explain --truncq / truncQ#914
d4straub merged 4 commits into
nf-core:devfrom
d4straub:reviewer-2-15-0

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@d4straub d4straub commented Sep 29, 2025

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Address reviewer comments for 2.15.0 in #911: Elaborate on newly exposed (but not changed) truncQ in DADA2's filterAndTrim, also discussed in detail in #909.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/ampliseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@d4straub d4straub mentioned this pull request Sep 29, 2025
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@erikrikarddaniel erikrikarddaniel left a comment

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👍

@d4straub
d4straub merged commit c59b366 into nf-core:dev Sep 29, 2025
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@d4straub
d4straub deleted the reviewer-2-15-0 branch September 29, 2025 09:32
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2 participants