docs: update BUSCO output docs after excluding complete directory#1075
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PR nf-core#1074 changed the BUSCO publishDir pattern in conf/modules.config from "*{.txt,.json,.log,-busco}" to "*{.txt,.json,.log}", so the per-bin [assembler]-[bin]/ complete directory (prodigal_output/, logs/, run-[lineage]/full_table.tsv, missing_busco_list.tsv, busco_sequences/) is no longer published. Remove it from docs/output.md, along with the now-moot busco_clean=false note, since that subdirectory is no longer published at all. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
dialvarezs
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d4straub,
jfy133,
muabnezor and
prototaxites
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July 15, 2026 06:43
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
FriederikeHanssen
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Jul 16, 2026
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Thanks @FriederikeHanssen! |
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Follow-up to #1074.
#1074 changed the BUSCO
publishDirpattern inconf/modules.configfrom*{.txt,.json,.log,-busco}to*{.txt,.json,.log}, so the per-bin[assembler]-[bin]/complete directory is no longer published.docs/output.mdstill described those files.This PR:
[assembler]-[bin]/block fromdocs/output.md(prodigal_output/,logs/,run-[lineage]/full_table.tsv,missing_busco_list.tsv,busco_sequences/).busco_clean=falsenote, since that subdirectory is no longer published regardless of the flag.PR checklist
nf-core pipelines lint).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).🤖 Generated with Claude Code