Add coverm/contig to nf-core/modules#997

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vinisalazar wants to merge 44 commits into

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Commits on Mar 16, 2026

Commits on Mar 17, 2026

Update coverm version in test snapshots
vinisalazar
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Commits on Mar 24, 2026

rename: coverm_mapper param → coverage_mapper

vinisalazar
and
claude
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feat: drop JGISUMMARIZEBAMCONTIGDEPTHS and depth_calculator param

vinisalazar
and
claude
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feat: repurpose percentidentity params for CoverM --min-read-percent-identity

vinisalazar
and
claude
committed
feat: add --bam-file-cache-directory to CoverM native mapper config

vinisalazar
and
claude
committed
docs: update coverage estimation section in usage.md

vinisalazar
and
claude
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docs: add CoverM to pipeline summary in ro-crate metadata

vinisalazar
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claude
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Commits on Apr 6, 2026

Commits on Apr 9, 2026

Commits on Apr 14, 2026

Commits on Apr 15, 2026

Commits on Apr 23, 2026

Merge branch 'dev' into dev
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