Skip to content

Replace local TABIX modules with nf-core htslib/bgziptabix#137

Merged
maxulysse merged 5 commits into
devfrom
feature/htslib-bgziptabix
Jun 8, 2026
Merged

Replace local TABIX modules with nf-core htslib/bgziptabix#137
maxulysse merged 5 commits into
devfrom
feature/htslib-bgziptabix

Conversation

@maxulysse

Copy link
Copy Markdown
Member

Replace the two local tabix modules (TABIX_BGZIPTABIX and TABIX_TABIX) with the single nf-core htslib/bgziptabix module.

The nf-core module handles both compression and indexing in one process, and automatically detects whether the input is already BGZF-compressed, simplifying the workflow code.

@maxulysse maxulysse merged commit d93b532 into dev Jun 8, 2026
20 checks passed
@maxulysse maxulysse deleted the feature/htslib-bgziptabix branch June 8, 2026 15:14
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant