chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#167

[edx-requirements-bot]

List of packages in the PR without any issue.

• astroid changes from 3.3.9 to 3.3.11
• build changes from 1.2.2.post1 to 1.3.0
• click changes from 8.1.8 to 8.2.1
• code-annotations changes from 2.2.0 to 2.3.0
• coverage changes from 7.8.0 to 7.10.2
• dill changes from 0.3.9 to 0.4.0
• distlib changes from 0.3.9 to 0.4.0
• lazy-object-proxy changes from 1.10.0 to 1.11.0
• pip-tools changes from 7.4.1 to 7.5.0
• platformdirs changes from 4.3.7 to 4.3.8
• pluggy changes from 1.5.0 to 1.6.0
• pycodestyle changes from 2.13.0 to 2.14.0
• pylint changes from 3.3.6 to 3.3.7
• pylint-plugin-utils changes from 0.8.2 to 0.9.0
• pymongo changes from 4.11.3 to 4.13.2
• pyproject-api changes from 1.9.0 to 1.9.1
• pytest changes from 8.3.5 to 8.4.1
• tomlkit changes from 0.13.2 to 0.13.3
• tox changes from 4.25.0 to 4.28.4
• typing-extensions changes from 4.13.0 to 4.14.1
• virtualenv changes from 20.29.3 to 20.33.0

[edx-requirements-bot]

These Packages need manual review..

• [MAJOR] cachetools changes from 5.5.2 to 6.1.0
• [REMOVED] django-simple-history (3.0.0) removed from the requirements
• [MAJOR] edx-opaque-keys changes from 2.12.0 to 3.0.0
• [MAJOR] packaging changes from 24.2 to 25.0
• [NEW] pygments (2.19.2) added to the requirements
• [MAJOR] setuptools changes from 78.1.0 to 80.9.0

[edx-requirements-bot]

Closing obsolete PR.