Fix GDAL installation issues

.github/workflows/docker-image.yml

@@ -11,6 +11,6 @@ jobs:
         runs-on: ubuntu-latest
 
         steps:
-            - uses: actions/checkout@v5
+            - uses: actions/checkout@v6
             - name: Build the Docker image
               run: docker build . --file Dockerfile --tag ${{ github.repository }}:$(date +%s)

.github/workflows/docker-publish.yml

@@ -13,7 +13,7 @@ jobs:
             contents: read
         steps:
             - name: Check out the repo
-              uses: actions/checkout@v5
+              uses: actions/checkout@v6
 
             - name: Log in to Docker Hub
               uses: docker/login-action@v3

.github/workflows/docs-build.yml

@@ -6,17 +6,23 @@ on:
 jobs:
     deploy:
         runs-on: ubuntu-latest
+        defaults:
+            run:
+                shell: bash -el {0}
         steps:
-            - uses: actions/checkout@v5
+            - uses: actions/checkout@v6
               with:
                   fetch-depth: 0
-            - uses: actions/setup-python@v6
+            - name: Setup micromamba
+              uses: mamba-org/setup-micromamba@v2
               with:
-                  python-version: "3.12"
-            - name: Install GDAL
-              run: |
-                  python -m pip install --upgrade pip
-                  pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL pyproj
+                  environment-name: docs-env
+                  create-args: >-
+                      python=3.12
+                      gdal
+                      pyproj
+                      -c conda-forge
+                  cache-environment: true
             - name: Test GDAL installation
               run: |
                   python -c "from osgeo import gdal"

.github/workflows/docs.yml

@@ -7,7 +7,7 @@ jobs:
     deploy:
         runs-on: ubuntu-latest
         steps:
-            - uses: actions/checkout@v5
+            - uses: actions/checkout@v6
             - uses: actions/setup-python@v6
               with:
                   python-version: "3.12"

.github/workflows/draft-pdf.yml

@@ -6,7 +6,7 @@ jobs:
         name: Paper Draft
         steps:
             - name: Checkout
-              uses: actions/checkout@v5
+              uses: actions/checkout@v6
             - name: Build draft PDF
               uses: openjournals/openjournals-draft-action@master
               with:

.github/workflows/macos.yml

@@ -22,34 +22,18 @@ jobs:
         env:
             SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
         steps:
-            - uses: actions/checkout@v5
+            - uses: actions/checkout@v6
 
-            - name: Setup Python
-              uses: conda-incubator/setup-miniconda@v3
+            - name: Setup micromamba
+              uses: mamba-org/setup-micromamba@v2
               with:
-                  auto-activate-base: true
-                  python-version: ${{ matrix.config.py }}
-                  channels: conda-forge,defaults
-                  channel-priority: true
-                  miniconda-version: latest
-
-            - name: Cache dependencies
-              uses: actions/cache@v4
-              with:
-                  path: ~/.cache/pip
-                  key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
-                  restore-keys: |
-                      ${{ runner.os }}-pip-
-
-            - name: Testing conda
-              run: |
-                  conda info
-                  conda list
-
-            - name: Install GDAL
-              run: |
-                  conda install -c conda-forge mamba --yes
-                  mamba install -c conda-forge gdal pyproj --yes
+                  environment-name: test-env
+                  create-args: >-
+                      python=${{ matrix.config.py }}
+                      gdal
+                      pyproj
+                      -c conda-forge
+                  cache-environment: true
 
             - name: Test GDAL installation
               run: |

.github/workflows/pypi.yml

@@ -12,7 +12,7 @@ jobs:
         runs-on: ubuntu-latest
 
         steps:
-            - uses: actions/checkout@v5
+            - uses: actions/checkout@v6
             - name: Set up Python
               uses: actions/setup-python@v6
               with:

.github/workflows/ubuntu.yml

@@ -21,18 +21,22 @@ jobs:
 
         env:
             SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
+        defaults:
+            run:
+                shell: bash -el {0}
         steps:
             - name: CHECKOUT CODE
-              uses: actions/checkout@v5
-            - name: SETUP PYTHON
-              uses: actions/setup-python@v6
+              uses: actions/checkout@v6
+            - name: Setup micromamba
+              uses: mamba-org/setup-micromamba@v2
               with:
-                  python-version: ${{ matrix.config.py }}
-            - name: Install GDAL
-              run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL
+                  environment-name: test-env
+                  create-args: >-
+                      python=${{ matrix.config.py }}
+                      gdal
+                      pyproj
+                      -c conda-forge
+                  cache-environment: true
             - name: Test GDAL installation
               run: |
                   python -c "from osgeo import gdal"

.github/workflows/windows.yml

@@ -10,15 +10,21 @@ name: Windows build
 jobs:
     test-windows:
         runs-on: windows-latest
+        defaults:
+            run:
+                shell: bash -el {0}
         steps:
-            - uses: actions/checkout@v5
-            - name: Install miniconda
-              uses: conda-incubator/setup-miniconda@v3
+            - uses: actions/checkout@v6
+            - name: Setup micromamba
+              uses: mamba-org/setup-micromamba@v2
               with:
-                  auto-activate-base: true
-                  python-version: "3.12"
-            - name: Install GDAL
-              run: conda install -c conda-forge gdal --yes
+                  environment-name: test-env
+                  create-args: >-
+                      python=3.12
+                      gdal
+                      pyproj
+                      -c conda-forge
+                  cache-environment: true
             - name: Test GDAL installation
               run: |
                   python -c "from osgeo import gdal"

.pre-commit-config.yaml

@@ -12,7 +12,7 @@ repos:
             args: ["--maxkb=500"]
 
     - repo: https://github.com/psf/black-pre-commit-mirror
-      rev: 25.9.0
+      rev: 25.11.0
       hooks:
           - id: black-jupyter
 
@@ -27,6 +27,6 @@ repos:
                 ]
 
     - repo: https://github.com/kynan/nbstripout
-      rev: 0.8.1
+      rev: 0.8.2
       hooks:
           - id: nbstripout