Repositories list

• TemperateMOI

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• lennonlab.github.io

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• SporeLifestyle

  Public
  R

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  Creative Commons Zero v1.0 Universal

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• MetabolicDistribution

  Public
  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• MetabolicDistribution_Beta

  Public
  R

  •

  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• deep.oxygen

  Public
  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• danger.signal

  Public
  HTML

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  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jan 26, 2026Jan 26, 2026

• cost_of_spore

  Public
  Here we quantified the energetic cost of sporulation in units of ATP by integrating time-resolved genome, transcriptome, and proteome profiles. We incorporated …

  R

  •

  MIT License

  •33 forks•11 star•00 issues•00 pull requests•Updated Jan 21, 2026Jan 21, 2026

• VirosporeQuant

  Public
  22 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2026Jan 19, 2026

• metabolake

  Public
  metabolic distribtuion of plankton

  R

  •

  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jan 7, 2026Jan 7, 2026

• lennonlab-original.github.io

  Public archive
  lennon lab website

  HTML

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  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•22 pull requests•Updated Dec 30, 2025Dec 30, 2025

• Gut

  Public
  Jupyter Notebook

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  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Dec 5, 2025Dec 5, 2025

• rhizo.rb.tnseq

  Public
  HTML

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  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Dec 3, 2025Dec 3, 2025

• division.labor

  Public
  HTML

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  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 24, 2025Nov 24, 2025

• residence-time-metagenomics

  Public
  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 8, 2025Nov 8, 2025

• cv

  Public
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 17, 2025Sep 17, 2025

• paleophage

  Public
  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 2, 2025Sep 2, 2025

• astrodorm

  Public
  R

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  GNU Affero General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 8, 2025Aug 8, 2025

• ASG-fitness-effects

  Public
  Code for "Effects of auxiliary sporulation genes on fitness" project

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 18, 2025Jul 18, 2025

• SporGermDB

  Public
  Identifies sporulation and germination genes on Uniprot and creates a reference database for lab use

  R

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  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jun 23, 2025Jun 23, 2025

• Auxiliary-Germination-Genes

  Public
  Repo for all things related to host germination genes found in viral genomes

  22 forks•00 stars•00 issues•11 pull request•Updated Jun 16, 2025Jun 16, 2025

• evolution-canyon

  Public
  R

  •33 forks•00 stars•00 issues•00 pull requests•Updated May 13, 2025May 13, 2025

• SporeMut

  Public
  mutation accumulation in dormancy

  R

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2025Apr 24, 2025

• lennonlab2.github.io

  Public
  HTML

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2025Apr 16, 2025

• R-package.installer

  Public
  Simplify re-loading of packages following R update

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 9, 2025Apr 9, 2025

• viro.fluidics

  Public
  R

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  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•11 pull request•Updated Apr 6, 2025Apr 6, 2025

• SporePlaque

  Public
  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 6, 2025Apr 6, 2025

• seedtheory

  Public
  R

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  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 6, 2025Apr 6, 2025

• p-meso

  Public
  GitHub Repo for mothur and R code included in Muscarella ME, Bird KC, Larsen ML, Placella SA, Lennon JT (In Press) Phosphorus resource heterogeneity in microbia…

  R

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  GNU General Public License v3.0

  •44 forks•11 star•00 issues•00 pull requests•Updated Apr 6, 2025Apr 6, 2025

• Rpf

  Public
  OCaml

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  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 29, 2025Mar 29, 2025