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    15 repositories

    • gcnvplot

      Public
      Seeing is believing
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 8, 2026Jul 8, 2026

    • ITDiscover

      Public
      Tool for discovering FLT3 ITDs from amplicon sequencing of AML samples
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 8, 2026Jul 8, 2026

    • skua

      Public
      Predatory and kleptoparasitic variant caller for detecting subclonal mutations in deep sequencing data
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 8, 2026Jul 8, 2026

    • abacus

      Public
      Python
      •
      MIT License
      •1•10•3•0•Updated Jun 29, 2026Jun 29, 2026

    • gwf-manager

      Public
      Python
      •
      MIT License
      •0•0•2•0•Updated Feb 25, 2026Feb 25, 2026

    • gwf

      Public
      A flexible, pragmatic workflow tool.
      Python
      •
      GNU General Public License v3.0
      •14•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • gwf-failed-targets

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 12, 2025Dec 12, 2025

    • sessionizer

      Public
      Your new favorite tool for creating XML session files for IGV
      Python
      •0•1•1•0•Updated Oct 17, 2025Oct 17, 2025

    • svtoolbox

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • snpahoy

      Public
      ID SNP analysis for NGS sequencing
      Python
      •
      MIT License
      •1•5•3•0•Updated Jan 21, 2023Jan 21, 2023

    • vartriage

      Public
      Second opinions for filtered variants
      Python
      •
      MIT License
      •0•3•0•0•Updated Dec 7, 2022Dec 7, 2022

    • gatk2ascat

      Public
      Convert GATK output to input for ASCAT
      Python
      •
      MIT License
      •0•1•1•0•Updated Oct 24, 2021Oct 24, 2021

    • guessadapt

      Public
      Guess which adapter was used in an NGS sequencing run
      Python
      •
      MIT License
      •0•7•1•0•Updated Oct 24, 2021Oct 24, 2021

    • REDCapAPI

      Public
      For interacting with REDCap in .net
      C#
      •0•0•0•0•Updated Nov 26, 2019Nov 26, 2019

    • REDCapImpoveIt

      Public
      For synchronization between IMPROVE and IMPROVE IT REDCap databases
      C#
      •0•0•0•0•Updated Feb 27, 2019Feb 27, 2019
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