Repositories list

• CIs_Medical_Imaging

  Public
  Repository for the Confidence Interval project.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2026Jun 26, 2026

• ReadingGroup

  Public
  ARAMIS's Reading Group

  33 forks•33 stars•00 issues•00 pull requests•Updated Jun 26, 2026Jun 26, 2026

• clinica

  Public
  Software platform for clinical neuroimaging studies

  pythonmachine-learningscikit-learn+ 9

  pythonmachine-learningscikit-learnneuroscienceneuroimagingspmfslantsfreesurferbids-format+ 2

  Python

  •

  Other

  •9191 forks•284284 stars•110110 issues•1515 pull requests•Updated Jun 24, 2026Jun 24, 2026

• clinicadl

  Public
  Open-source Python library for reproducible deep learning in neuroimaging

  pythondeep-learningpytorch+ 3

  pythondeep-learningpytorchmedical-imagingneuroimagingbrain-imaging

  Python

  •

  MIT License

  •6060 forks•183183 stars•2121 issues•1010 pull requests•Updated Jun 23, 2026Jun 23, 2026

• aramis-lab.github.io

  Public
  Website of the Aramis team

  1111 forks•44 stars•77 issues•11 pull request•Updated Jun 23, 2026Jun 23, 2026

• leaspy

  Public
  LEArning Spatiotemporal Patterns in Python

  Python

  •

  BSD 3-Clause Clear License

  •1313 forks•2525 stars•1414 issues•22 pull requests•Updated Jun 17, 2026Jun 17, 2026

• leaspy_tutorial

  Public
  The notebooks and libs for the leaspy tutorial remains here.

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 10, 2026Jun 10, 2026

• CIs_Medical_Imaging_Plots

  Public
  Repository for the figures of the 2026 journal paper on confidence intervals in medical imaging

  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 9, 2026Jan 9, 2026

• clinica-pydra-petpvc

  Public
  Pydra tasks for PETPVC designed for Clinica

  neuroimagingpartial-volume-correctionpositron-emission-tomography+ 1

  neuroimagingpartial-volume-correctionpositron-emission-tomographypydra

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•22 pull requests•Updated Nov 24, 2025Nov 24, 2025

• clinica-pydra-ants

  Public
  Pydra tasks for ANTs designed for Clinica

  neuroimagingantspydra

  neuroimagingantspydra

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•22 pull requests•Updated Nov 24, 2025Nov 24, 2025

• clinicadl-zoo

  Public
  Community transforms and models for ClinicaDL.

  Python

  •

  MIT License

  •33 forks•11 star•00 issues•33 pull requests•Updated Nov 24, 2025Nov 24, 2025

• tuto-doc

  Public
  Toy library for documentation tutorial (summer 2025)

  Python

  •

  MIT License

  •77 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• clinica-pydra-freesurfer

  Public
  Pydra tasks for FreeSurfer designed for Clinica

  neuroimagingfreesurferpydra

  neuroimagingfreesurferpydra

  Python

  •

  Apache License 2.0

  •11 fork•55 stars•00 issues•55 pull requests•Updated Oct 27, 2025Oct 27, 2025

• pydra-brainstat

  Public
  Pydra tasks for BrainStat

  neuroimagingpydra

  neuroimagingpydra

  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•55 pull requests•Updated Oct 27, 2025Oct 27, 2025

• clinica-pydra-fsl

  Public
  Pydra tasks for FSL designed for Clinica

  neuroimagingfslpydra

  neuroimagingfslpydra

  Python

  •

  Apache License 2.0

  •11 fork•33 stars•00 issues•55 pull requests•Updated Oct 27, 2025Oct 27, 2025

• EHR_dementia_prediction_65

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• clinicadl-website

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 7, 2025Jul 7, 2025

• meta-registries-SNDS

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 30, 2025Jun 30, 2025

• formation-SED-2025

  Public
  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•11 issue•11 pull request•Updated Jun 26, 2025Jun 26, 2025

• dev-meetings

  Public
  Materials for ARAMIS dev meetings.

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 11, 2025Jun 11, 2025

• aramis-beamer-minimalist

  Public template
  Minimalist beamer template made for Aramis lab’s fellows

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 27, 2025May 27, 2025

• clinicadl-tutorials

  Public
  Tutorials for ClinicaDL.

  Jupyter Notebook

  •

  MIT License

  •33 forks•22 stars•00 issues•00 pull requests•Updated Apr 16, 2025Apr 16, 2025

• miccai2022-stratifiad

  Public
  Python

  •

  MIT License

  •11 fork•33 stars•11 issue•00 pull requests•Updated Feb 18, 2025Feb 18, 2025

• clinicaio

  Public
  Python library for input/output management of all Clinica projects.

  Python

  •

  MIT License

  •44 forks•11 star•22 issues•33 pull requests•Updated Dec 2, 2024Dec 2, 2024

• anomdetect_diffusion

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Nov 18, 2024Nov 18, 2024

• MOOD_2024_public

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 23, 2024Aug 23, 2024

• clinicadl_handbook

  Public
  Tutorial to use (new version of) clinicadl (>1.0.3)

  learningdeepneuroimaging

  learningdeepneuroimaging

  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •77 forks•22 stars•55 issues•11 pull request•Updated Jun 4, 2024Jun 4, 2024

• pydra-spm

  Public archive
  Pydra tasks for SPM

  pythonneuroimagingspm+ 1

  pythonneuroimagingspmpydra

  Python

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 2, 2024Apr 2, 2024

• pydra-bids

  Public archive
  Pydra tasks for BIDS I/O

  neuroimagingbidspydra

  neuroimagingbidspydra

  Python

  •

  Apache License 2.0

  •11 fork•22 stars•00 issues•11 pull request•Updated Apr 2, 2024Apr 2, 2024

• pydra-dcm2bids

  Public archive
  Pydra tasks for dcm2bids

  dicombidspydra

  dicombidspydra

  Python

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 1, 2024Apr 1, 2024