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7 repositories

AnaCore-utils
Public
Scripts for easily process NGS data from medical centers.
Python
•
GNU General Public License v3.0
•1•3•0•1•Updated Jul 6, 2026Jul 6, 2026
AnaCore
Public
Libraries for managing standard file formats and objects from NGS
bioinformatics python-library
bioinformatics python-library
Python
•
GNU General Public License v3.0
•1•6•0•1•Updated Jun 30, 2026Jun 30, 2026
snake-basket
Public
Customisable rules for snakemake.
snakemake
snakemake
Python
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GNU General Public License v3.0
•0•3•0•0•Updated Jun 22, 2026Jun 22, 2026
SoFuR
Public
Worflow to detect, annotate, filter and vizualize somatic fusions from stranded paired-end RNA-seq from Illumina instruments.
bioinformatics rna-seq fusion
bioinformatics rna-seq fusion somatic-fusion-genes
HTML
•
GNU General Public License v3.0
•0•1•0•0•Updated Dec 16, 2025Dec 16, 2025
MInITI
Public
Detecting microsatellites instability by high throughput sequencing.
machine-learning ngs msi
machine-learning ngs msi
HTML
•
GNU General Public License v3.0
•0•0•0•0•Updated Jun 9, 2024Jun 9, 2024
zfq
Public
FastQ file compressor.
bioinformatics compression fastq
bioinformatics compression fastq
Python
•
GNU General Public License v3.0
•0•3•0•0•Updated Jan 30, 2024Jan 30, 2024
miams
Public
Workflow for detecting microsatellite instability by next-generation sequencing on amplicons.
JavaScript
•1•2•1•0•Updated May 16, 2020May 16, 2020

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