Repositories list

• PROTRIDER

  Public
  Python

  •

  MIT License

  •55 forks•55 stars•00 issues•00 pull requests•Updated Jun 18, 2026Jun 18, 2026

• AbSplice2_analysis

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• NMD-Scanner

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•11 pull request•Updated May 14, 2026May 14, 2026

• scooby

  Public
  scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

  Python

  •

  MIT License

  •99 forks•6969 stars•33 issues•22 pull requests•Updated Apr 1, 2026Apr 1, 2026

• absplice2

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•22 stars•11 issue•00 pull requests•Updated Mar 25, 2026Mar 25, 2026

• drop

  Public
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

  rna-seqpipelinegenetic-diagnosis

  rna-seqpipelinegenetic-diagnosis

  Python

  •

  MIT License

  •5757 forks•171171 stars•4040 issues•11 pull request•Updated Mar 24, 2026Mar 24, 2026

• funcRVP

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 1, 2026Mar 1, 2026

• FRASER

  Public
  FRASER - Find RAre Splicing Events in RNA-seq

  rna-seqrdiagnostics+ 4

  rna-seqrdiagnosticsoutlier-detectionsplicingrare-diseaseaberrant-splicing

  R

  •

  Other

  •2525 forks•5555 stars•2626 issues•11 pull request•Updated Feb 11, 2026Feb 11, 2026

• OUTRIDER

  Public
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

  rna-seqrdiagnostics+ 4

  rna-seqrdiagnosticsoutlier-detectionmendelian-geneticsexpression-analysiscount-data

  R

  •

  Other

  •1313 forks•5858 stars•1313 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• pyDataViz

  Public
  Python version of the DataViz script

  JavaScript

  •11 fork•11 star•11 issue•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• AbExp

  Public
  Python

  •

  MIT License

  •11 fork•88 stars•00 issues•00 pull requests•Updated Jan 27, 2026Jan 27, 2026

• Modanovo

  Public
  Python

  •

  Apache License 2.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• drop_demo_data

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• AbExp-web

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 12, 2025Aug 12, 2025

• splicemap

  Public
  Jupyter Notebook

  •44 forks•2424 stars•22 issues•00 pull requests•Updated Jul 29, 2025Jul 29, 2025

• absplice

  Public
  Python

  •44 forks•4040 stars•11 issue•22 pull requests•Updated Jul 3, 2025Jul 3, 2025

• tMAE

  Public
  R

  •

  MIT License

  •55 forks•11 star•00 issues•00 pull requests•Updated Jun 3, 2025Jun 3, 2025

• scooby_reproducibility

  Public
  Jupyter Notebook

  •

  MIT License

  •22 forks•77 stars•11 issue•00 pull requests•Updated Jun 1, 2025Jun 1, 2025

• dependencies_DNALM

  Public
  Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements

  Jupyter Notebook

  •

  MIT License

  •11 fork•2929 stars•33 issues•00 pull requests•Updated Mar 13, 2025Mar 13, 2025

• Watershed

  Public
  Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq

  Jupyter Notebook

  •1313 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2025Feb 26, 2025

• abexp-ukbb-prs

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2025Feb 26, 2025

• abexp-ukbb-variant-clumping

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2025Feb 26, 2025

• wBuild

  Public
  R project report builder

  bioinformaticssnakemakewbuild

  bioinformaticssnakemakewbuild

  Python

  •66 forks•44 stars•1111 issues•66 pull requests•Updated Feb 26, 2025Feb 26, 2025

• AbExp-utils

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 20, 2025Feb 20, 2025

• spectralis

  Public
  Python

  •88 forks•1717 stars•55 issues•00 pull requests•Updated Oct 1, 2024Oct 1, 2024

• rep

  Public
  RNA expression prediction

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 11, 2024Jul 11, 2024

• Leukemia_outlier

  Public
  R

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 10, 2024Jun 10, 2024

• FRASER-old-gagneurlab

  Public
  rna-seqrdiagnostics+ 4

  rna-seqrdiagnosticsoutlier-detectionmendelian-geneticssplicing-analysesbeta-binomial

  R

  •

  MIT License

  •2525 forks•1313 stars•00 issues•00 pull requests•Updated May 13, 2024May 13, 2024

• dataviz

  Public
  Data Analysis and Visualization in R

  HTML

  •22 forks•11 star•00 issues•11 pull request•Updated Feb 12, 2024Feb 12, 2024

• FRASER-2.0-analysis

  Public
  This repository contains the analysis code for the FRASER 2.0 manuscript.

  R

  •

  MIT License

  •00 forks•33 stars•22 issues•00 pull requests•Updated Sep 29, 2023Sep 29, 2023