Repositories list

• noctua-models

  Public
  This is the data repository for the models created and edited with the Noctua tool stack for GO.

  annotationontologypathways+ 3

  annotationontologypathwaysgeneontologynoctua-modelsgo-cam

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •33 forks•1212 stars•7474 issues•22 pull requests•Updated Aug 3, 2026Aug 3, 2026

• go-ontology

  Public
  Source ontology files for the Gene Ontology

  goowlontology+ 5

  goowlontologygene-ontologyobogeneontologyfunctional-annotationobofoundry

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •4747 forks•249249 stars•680680 issues•5353 pull requests•Updated Aug 3, 2026Aug 3, 2026

• annotation-query

  Public
  This is a repository for doing the queries like go-annotation, but with nobody following it

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•136136 issues•00 pull requests•Updated Jul 31, 2026Jul 31, 2026

• gopreprocess

  Public
  Python

  •

  MIT License

  •11 fork•33 stars•22 issues•00 pull requests•Updated Jul 30, 2026Jul 30, 2026

• noctua-models-migrations

  Public
  Migration, change, update metadata for noctua-models

  Ruby

  •00 forks•00 stars•66 issues•00 pull requests•Updated Jul 30, 2026Jul 30, 2026

• minerva

  Public
  convertergeneontologygaf+ 2

  convertergeneontologygafnoctuanoctua-models

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •1010 forks•1010 stars•5555 issues•1111 pull requests•Updated Jul 30, 2026Jul 30, 2026

• noctua-visual-pathway-editor

  Public
  HTML

  •00 forks•00 stars•2727 issues•00 pull requests•Updated Jul 30, 2026Jul 30, 2026

• go-cam-drop-box

  Public
  Staging drop box for GO-CAM model submissions, validated via PR CI. Forming.

  Python

  •55 forks•00 stars•11 issue•99 pull requests•Updated Jul 30, 2026Jul 30, 2026

• gocam-py

  Public
  Draft data model for GO-CAMs

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks•33 stars•1313 issues•22 pull requests•Updated Jul 30, 2026Jul 30, 2026

• pipeline

  Public
  Declarative pipeline for the Gene Ontology.

  pipelinegeneontology

  pipelinegeneontology

  BSD 3-Clause "New" or "Revised" License

  •55 forks•55 stars•6565 issues•11 pull request•Updated Jul 30, 2026Jul 30, 2026

• go-annotation

  Public
  This repository hosts the tracker for issues pertaining to GO annotations.

  annotationannotationsontology+ 4

  annotationannotationsontologygenescurationgeneontologyfunctional-annotation

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1010 forks•3838 stars•439439 issues•11 pull request•Updated Jul 29, 2026Jul 29, 2026

• pipeline-from-goa

  Public
  The new GO pipeline that runs after GOA has made QC file products available.

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•1010 issues•00 pull requests•Updated Jul 29, 2026Jul 29, 2026

• go-fastapi

  Public
  monarchinitiativeai4curation

  monarchinitiativeai4curation

  Python

  •33 forks•88 stars•1111 issues•00 pull requests•Updated Jul 28, 2026Jul 28, 2026

• go-site

  Public
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

  yamlmetadatadocumentation+ 2

  yamlmetadatadocumentationgene-ontologygeneontology

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •9090 forks•4949 stars•225225 issues•4040 pull requests•Updated Jul 28, 2026Jul 28, 2026

• go-cam-model-status

  Public
  Internal status page for the low-level Noctua storage layer for GO-CAMs in OWL/RDF

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 28, 2026Jul 28, 2026

• amigo

  Public
  AmiGO is the public interface for the Gene Ontology.

  browserannotationsontology+ 3

  browserannotationsontologygenesgeneontologyfunctional-annotation

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1717 forks•3131 stars•174174 issues•4343 pull requests•Updated Jul 27, 2026Jul 27, 2026

• go-shapes

  Public
  Schema for Gene Ontology Causal Activity Models defined using RDF Shapes

  owlontologyshex+ 4

  owlontologyshexgeneontologynoctuanoctua-modelsgo-cam

  Shell

  •00 forks•22 stars•4040 issues•77 pull requests•Updated Jul 27, 2026Jul 27, 2026

• devops-apache-proxy

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 22, 2026Jul 22, 2026

• noctua

  Public
  Graph-based modeling environment for biology, including prototype editor and services

  annotationowlontology+ 9

  annotationowlontologypathwayscurationgeneontologyfunctional-annotationmonarchinitiativenoctuanoctua-models+ 2

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1313 forks•4343 stars•5757 issues•1313 pull requests•Updated Jul 18, 2026Jul 18, 2026

• geneontology.github.io

  Public
  Repository for storing GO documentation, directly available through the general GO site

  documentationgeneontologygithubio

  documentationgeneontologygithubio

  SCSS

  •

  MIT License

  •99 forks•88 stars•1515 issues•77 pull requests•Updated Jul 16, 2026Jul 16, 2026

• gocam-agent

  Public
  go-camagentic-aiai4curation

  go-camagentic-aiai4curation

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•00 stars•11 issue•66 pull requests•Updated Jul 10, 2026Jul 10, 2026

• go-cam-browser

  Public
  Static site for exploring GO-CAM models

  TypeScript

  •00 forks•00 stars•22 issues•00 pull requests•Updated Jul 8, 2026Jul 8, 2026

• go-prototype-0000001

  Public
  A GO prototype.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•44 issues•00 pull requests•Updated Jul 8, 2026Jul 8, 2026

• go-cam-evidence-unwinder

  Public
  Find standard annotations with edges connected to multiple evidence nodes. The code will then duplicate ("unwind") the standard annotation for each evidence so …

  Python

  •00 forks•00 stars•33 issues•11 pull request•Updated Jul 8, 2026Jul 8, 2026

• pipeline-raw-go-cam

  Public
  [EXPERIMENTAL] Curation GO-CAMs re-published for internal use.

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•44 issues•00 pull requests•Updated Jul 5, 2026Jul 5, 2026

• reactome-go-cams

  Public
  A set of GO-CAMs built automatically from Reactome pathways.

  pathwaysreactomegeneontology+ 3

  pathwaysreactomegeneontologyreactome-pathwaynoctua-modelsgo-cam

  00 forks•11 star•22 issues•11 pull request•Updated Jul 2, 2026Jul 2, 2026

• pathways2GO

  Public
  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

  ontologypathwaysgeneontology+ 2

  ontologypathwaysgeneontologybiopaxgo-cam

  Java

  •00 forks•1111 stars•135135 issues•00 pull requests•Updated Jul 2, 2026Jul 2, 2026

• go-graphstore

  Public
  Gene Ontology RDF GraphStore

  rdfontologyblazegraph+ 4

  rdfontologyblazegraphgeneontologygafnoctua-modelsgo-cam

  Makefile

  •44 forks•33 stars•22 issues•11 pull request•Updated May 30, 2026May 30, 2026

• noctua_app_stack

  Public
  geneontologynoctuanoctua-models

  geneontologynoctuanoctua-models

  HCL

  •11 fork•00 stars•22 issues•00 pull requests•Updated May 27, 2026May 27, 2026

• web-components

  Public
  Gene Ontology web component library

  gene-ontology

  gene-ontology

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•11 star•1717 issues•00 pull requests•Updated May 21, 2026May 21, 2026