Repositories list

• gcp-variant-transforms

  Public
  GCP Variant Transforms

  Python

  •

  Apache License 2.0

  •5959 forks•147147 stars•109109 issues•55 pull requests•Updated May 21, 2026May 21, 2026

• dataflow-java

  Public archive
  Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.

  Java

  •

  Apache License 2.0

  •2929 forks•3838 stars•2020 issues•33 pull requests•Updated Aug 9, 2023Aug 9, 2023

• .allstar

  Public archive
  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 6, 2022Dec 6, 2022

• .github

  Public archive
  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 26, 2022Oct 26, 2022

• variant-annotation

  Public archive
  Use cloud technology to annotate human sequence variants in parallel.

  Jupyter Notebook

  •

  Apache License 2.0

  •1111 forks•1111 stars•22 issues•11 pull request•Updated Jun 4, 2021Jun 4, 2021

• readthedocs

  Public archive
  Documentation for the Google Genomics cookbook.

  Apache License 2.0

  •4747 forks•142142 stars•88 issues•00 pull requests•Updated May 20, 2020May 20, 2020

• pipelines-tools

  Public archive
  Tools for developing and running pipelines with the Genomics API

  Go

  •

  Apache License 2.0

  •1212 forks•2424 stars•66 issues•44 pull requests•Updated Jan 16, 2020Jan 16, 2020

• htsget

  Public archive
  Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage

  Go

  •

  Apache License 2.0

  •88 forks•2525 stars•55 issues•55 pull requests•Updated Nov 19, 2019Nov 19, 2019

• gcp-deepvariant-runner

  Public archive
  This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

  Python

  •

  Apache License 2.0

  •66 forks•22 stars•77 issues•55 pull requests•Updated Sep 11, 2019Sep 11, 2019

• cloudml-examples

  Public archive
  Examples of using CloudML with genomic data.

  Python

  •

  Apache License 2.0

  •1010 forks•1818 stars•00 issues•00 pull requests•Updated May 24, 2019May 24, 2019

• beacon-go

  Public archive
  AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.

  Go

  •

  Apache License 2.0

  •55 forks•44 stars•11 issue•11 pull request•Updated Dec 14, 2018Dec 14, 2018

• ga4gh-identity

  Public archive
  GA4GH Researcher Identity Tools

  Go

  •

  Apache License 2.0

  •11 fork•22 stars•33 issues•00 pull requests•Updated Oct 15, 2018Oct 15, 2018

• pipelines-api-examples

  Public archive
  Examples for the Google Genomics Pipelines API.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2626 forks•5050 stars•1212 issues•00 pull requests•Updated Dec 15, 2017Dec 15, 2017

• dockerflow

  Public archive
  Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API

  Java

  •

  Apache License 2.0

  •1515 forks•103103 stars•77 issues•00 pull requests•Updated Nov 21, 2017Nov 21, 2017

• utils-java

  Public archive
  Common Java files for Google Genomics integrations.

  Java

  •

  Apache License 2.0

  •99 forks•55 stars•66 issues•00 pull requests•Updated Oct 30, 2017Oct 30, 2017

• datalab-examples

  Public archive
  Example Cloud Datalab iPython Notebooks for genomics use cases.

  Jupyter Notebook

  •

  Apache License 2.0

  •99 forks•2525 stars•11 issue•00 pull requests•Updated Sep 5, 2017Sep 5, 2017

• grid-computing-tools

  Public archive
  Scripts and samples for using Grid Engine on Google Cloud Platform.

  Shell

  •

  Apache License 2.0

  •44 forks•1313 stars•33 issues•00 pull requests•Updated Aug 2, 2017Aug 2, 2017

• bigquery-examples

  Public archive
  Advanced BigQuery examples on genomic data.

  Python

  •

  Apache License 2.0

  •2929 forks•8989 stars•77 issues•00 pull requests•Updated Jun 9, 2017Jun 9, 2017

• getting-started-bigquery

  Public archive
  Examples of how to get started with genomics data in BigQuery in many languages.

  R

  •

  Apache License 2.0

  •2222 forks•5353 stars•11 issue•00 pull requests•Updated Jun 9, 2017Jun 9, 2017

• elasticluster

  Public archive
  Python

  •149149 forks•99 stars•66 issues•00 pull requests•Updated Feb 14, 2017Feb 14, 2017

• spark-examples

  Public archive
  Apache Spark jobs such as Principal Coordinate Analysis.

  Scala

  •

  Apache License 2.0

  •3737 forks•7777 stars•1010 issues•00 pull requests•Updated Jan 30, 2017Jan 30, 2017