Repositories list

• circtools

  Public
  circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

  Python

  •

  GNU General Public License v3.0

  •2121 forks•22 stars•22 issues•00 pull requests•Updated Jun 11, 2026Jun 11, 2026

• snakebuilder

  Public
  Utility for building snakemake workflow files for for circtools

  Python

  •00 forks•00 stars•33 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• jakobilab-web

  Public
  👥 Create a stunning Research Group Website with Wowchemy and Hugo

  TeX

  •

  MIT License

  •405405 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• CTS505_2025

  Public
  Repository holding code and other documents for the CTS 505 course "Introduction to bioinformatics" at the University of Arizona, College of Medicine Phoenix.

  TeX

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2025Dec 9, 2025

• glembotskilab-web

  Public
  TeX

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 21, 2025Feb 21, 2025

• long_read_circRNA

  Public
  CircRNA detection in nanopore data

  Python

  •

  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2025Jan 28, 2025

• pblat

  Public
  parallelized blat with multi-threads support

  C

  •

  Other

  •1616 forks•00 stars•00 issues•00 pull requests•Updated Jan 22, 2025Jan 22, 2025

• bioinfo-scripts

  Public
  Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder

  bioinformaticsslurmrna+ 4

  bioinformaticsslurmrnacircularbioinformatics-scriptscircrnasslurm-workload-manager

  Shell

  •

  Other

  •11 fork•11 star•00 issues•00 pull requests•Updated May 29, 2024May 29, 2024

• .github

  Public
  Public Jakobi lab repository

  00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2024May 1, 2024

• circhemy

  Public
  Convert and query IDs of circular RNAs from many different databases

  converterconversionrna+ 4

  converterconversionrnacircularcircrnanaming-patterncircularrna

  Python

  •

  GNU General Public License v3.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Apr 26, 2024Apr 26, 2024

• cts505_2023

  Public
  Repository holding code and other documents for the CTS 505 course "Introduction to bioinformatics" at the University of Arizona, College of Medicine Phoenix.

  bashdata-sciencebioinformatics+ 4

  bashdata-sciencebioinformaticsrrnaseqcts505clinical-translational-graduate-program

  TeX

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 5, 2023Dec 5, 2023

• slurm-tools

  Public
  Tools for daily work with the SLURM scheduler

  hpcslurm

  hpcslurm

  Shell

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2023Nov 6, 2023

• wowchemy-hugo-modules

  Public
  🔥 The website builder for Hugo. No code, build with widgets! 创建在线课程，学术简历或初创网站。

  HTML

  •

  MIT License

  •2.9k2.9k forks•00 stars•00 issues•1111 pull requests•Updated Mar 7, 2023Mar 7, 2023

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •4k4k forks•00 stars•00 issues•00 pull requests•Updated Aug 27, 2022Aug 27, 2022

• playground

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 29, 2022Jul 29, 2022

• saruman

  Public
  SARUMAN: Using GPU programming for short read mapping

  mappinggpuread+ 2

  mappinggpureadsequencingexact

  C

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 16, 2019Aug 16, 2019