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    83 repositories

    • dashboard

      Public
      Overview of all Neuroinformatics Unit repos
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •34•4•5•1•Updated Jun 14, 2026Jun 14, 2026

    • OSCaR

      Public
      A python package for breeding scheme calculations.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•22•2•Updated Jun 13, 2026Jun 13, 2026

    • movement

      Public
      A Python toolbox for analysing animal body movements across space and time
      behaviorkinematicsneuroscience
      behaviorkinematicsneurosciencebehaviouranimalmotion-trackingethology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •139•281•132•57•Updated Jun 13, 2026Jun 13, 2026

    • poseinterface

      Public
      Run pose estimation across frameworks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•10•1•Updated Jun 12, 2026Jun 12, 2026

    • datashuttle

      Public
      Tool for the creation, validation and transfer of neuroscience project folders.
      neurosciencedata-managementneuroblueprint
      neurosciencedata-managementneuroblueprint
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •40•35•43•3•Updated Jun 11, 2026Jun 11, 2026

    • spikewrap

      Public
      A package to manage electrophysiology analysis.
      electrophysiologyneuropixelsextracellular-electrophysiology
      electrophysiologyneuropixelsextracellular-electrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•23•23•5•Updated Jun 8, 2026Jun 8, 2026

    • osss-python-prep

      Public
      TypeScript
      •0•2•0•0•Updated Jun 5, 2026Jun 5, 2026

    • NeuroBlueprint

      Public
      Lightweight data specification for systems neuroscience, inspired by BIDS.
      Creative Commons Attribution 4.0 International
      •5•22•14•1•Updated Jun 4, 2026Jun 4, 2026

    • slides-fls-robotics-automation

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 4, 2026Jun 4, 2026

    • fancylog

      Public
      Fancier logging with python.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•16•11•1•Updated Jun 2, 2026Jun 2, 2026

    • python-cookiecutter

      Public
      Utility to create a basic Python project structure with tests, CI etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•39•13•2•Updated Jun 1, 2026Jun 1, 2026

    • qt-niu

      Public
      Reusable Qt elements
      Python
      •
      MIT License
      •0•6•0•0•Updated Jun 1, 2026Jun 1, 2026

    • slurmio

      Public
      Python tools to read SLURM job parameters.
      Python
      •
      MIT License
      •1•8•0•0•Updated Jun 1, 2026Jun 1, 2026

    • swc-slack

      Public
      Tools to interface with slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•8•0•0•Updated Jun 1, 2026Jun 1, 2026

    • ethology

      Public
      Mix-and-match computer vision tools for your animal behaviour analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •32•27•31•28•Updated Jun 1, 2026Jun 1, 2026

    • course-ephys-osss

      Public
      A repository to plan the extracellular electrophysiology course for OSSS 2026
      TeX
      •
      Creative Commons Attribution 4.0 International
      •1•1•2•0•Updated May 30, 2026May 30, 2026

    • neuroinformatics-unit.github.io

      Public
      Home website of the Neuroinformatics Unit
      BSD 3-Clause "New" or "Revised" License
      •8•14•13•0•Updated May 29, 2026May 29, 2026

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •275•3•0•1•Updated May 23, 2026May 23, 2026

    • .github

      Public
      MIT License
      •1•6•1•0•Updated May 21, 2026May 21, 2026

    • HowTo

      Public
      NIU website on common software problems and their troubleshooting
      Creative Commons Attribution 4.0 International
      •1•10•13•3•Updated May 15, 2026May 15, 2026

    • driftplots

      Public
      Viewing Kilosort drift maps
      Python
      •
      MIT License
      •0•2•4•0•Updated May 14, 2026May 14, 2026

    • actions

      Public
      Re-usable GitHub Action scripts
      MIT License
      •5•14•9•1•Updated May 5, 2026May 5, 2026

    • slides-ibl-2026

      Public
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • sphinx-deployment-test

      Public
      A "toy" website repository for testing our sphinx build and deploy GitHub actions
      Creative Commons Attribution 4.0 International
      •1•2•0•0•Updated Apr 13, 2026Apr 13, 2026

    • slides-movement-BehavForumWebinar

      Public
      Slides about movement, presented at 'The Behaviour Forum Webinar'.
      Lua
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • zebras-stitching

      Public
      Exploring how to stitch drone imagery and animal trajectories
      Python
      •
      MIT License
      •3•3•1•0•Updated Mar 15, 2026Mar 15, 2026

    • derotation

      Public
      Derotate images acquired via multiphoton calcium imaging
      neurosciencecalcium-imagingneuroscience-methods
      neurosciencecalcium-imagingneuroscience-methods
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•17•5•3•Updated Mar 6, 2026Mar 6, 2026

    • scripts

      Public
      Small but useful scripts to share
      Python
      •0•7•0•1•Updated Feb 18, 2026Feb 18, 2026

    • slides-trusted-by-design

      Public
      Slides for the "Trusted by design" talk, presented at FOSDEM 2026.
      Lua
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 31, 2026Jan 31, 2026

    • course-animals-in-motion

      Public
      A handbook about open-source tools for tracking animals in videos and quantifying behaviour.
      pythonbehaviortracking
      pythonbehaviortrackingmotionhandbookanimalsmovementquarto
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•6•8•0•Updated Jan 30, 2026Jan 30, 2026
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