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    171 repositories

    • sparql-examples

      Public
      A set of SPARQL examples that are used in different SIB resources
      HTML
      •
      Other
      •36•38•6•6•Updated Sep 1, 2026Sep 1, 2026

    • termal

      Public
      Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.
      rustbioinformaticsterminal
      rustbioinformaticsterminalhpctuimsamultiple-sequence-alignement
      Rust
      •
      MIT License
      •5•34•1•0•Updated Sep 1, 2026Sep 1, 2026

    • sparql-examples-utils

      Public
      Help maintain your SPARQL examples collection
      sparqljunit5
      sparqljunit5
      Java
      •
      Other
      •5•7•4•1•Updated Sep 1, 2026Sep 1, 2026

    • training_repos_traffic_tracker

      Public
      some code to track the traffic on multiple github repos beyond the 15 days limit
      Python
      •2•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • CAS-UNIL-intro-to-unix

      Public
      Introduction to Linux / UNIX and the Bash shell - UNIL CAS in data stewardship
      linuxbashunix
      linuxbashunix
      0•1•0•0•Updated Aug 31, 2026Aug 31, 2026

    • CAS-UNIL-intro-to-git

      Public
      Introduction to Git - UNIL CAS in data stewardship
      0•1•0•0•Updated Aug 31, 2026Aug 31, 2026

    • training-collection

      Public
      Collection of bioinformatics training materials
      Python
      •
      Other
      •200•1.1k•1•0•Updated Aug 30, 2026Aug 30, 2026

    • single-cell-python-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •2•5•0•0•Updated Aug 30, 2026Aug 30, 2026

    • spatial-transcriptomics-training

      Public
      R
      •
      Creative Commons Attribution 4.0 International
      •3•6•1•0•Updated Aug 30, 2026Aug 30, 2026

    • cancer-variants-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •4•12•0•0•Updated Aug 30, 2026Aug 30, 2026

    • swisslipidsreact

      Public
      Enumerating reactions based on SwissLipids and Rhea DB
      Python
      •0•0•2•0•Updated Aug 27, 2026Aug 27, 2026

    • advanced-r-training

      Public
      Other
      •0•0•0•0•Updated Aug 26, 2026Aug 26, 2026

    • advanced-statistics

      Public
      Webpage for SIB's advanced statistics course
      Other
      •5•16•0•0•Updated Aug 25, 2026Aug 25, 2026

    • kgsteward

      Public
      Knowledge Graph Steward - Command line tool to help manage RDF store
      Python
      •
      GNU General Public License v3.0
      •2•8•7•0•Updated Aug 20, 2026Aug 20, 2026

    • sparql-editor

      Public
      💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-awar…
      sparqlsparql-querysparql-query-builder
      sparqlsparql-querysparql-query-buildersparql-editoryasgui
      TypeScript
      •
      MIT License
      •7•24•23•0•Updated Aug 20, 2026Aug 20, 2026

    • obelisk-docker

      Public
      Shell
      •0•1•0•0•Updated Aug 17, 2026Aug 17, 2026

    • easybuild-easyconfigs

      Public
      A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
      Python
      •
      GNU General Public License v2.0
      •792•3•0•0•Updated Aug 13, 2026Aug 13, 2026

    • sib-software-stack

      Public
      Scripts and documentation to deploy the SIB software stack
      Perl
      •0•1•0•0•Updated Aug 13, 2026Aug 13, 2026

    • intro-machine-learning-with-R-training

      Public
      Repository of the material for the Introduction to Machine Learning with R SIB course
      R
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Aug 10, 2026Aug 10, 2026

    • training-cookbook

      Public
      Other
      •0•0•2•0•Updated Aug 4, 2026Aug 4, 2026

    • FAIR-training-flowchart

      Public
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Aug 4, 2026Aug 4, 2026

    • analyze-training-needs-survey

      Public
      R
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Aug 3, 2026Aug 3, 2026

    • intro-machine-learning-training

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •24•76•2•0•Updated Jul 31, 2026Jul 31, 2026

    • first-steps-with-python-training

      Public
      repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •19•71•2•0•Updated Jul 31, 2026Jul 31, 2026

    • feature-selection-training

      Public
      Repository of the material for the Feature Selection for Bioinformatics with Python SIB course https://www.sib.swiss/training/course/FEATS
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • mol-search-sparql-service

      Public
      🫆 A SPARQL service for finding similar chemicals and substructures using molecular fingerprints with RDKit
      sparqlrdkit
      sparqlrdkit
      Python
      •
      MIT License
      •0•3•2•0•Updated Jul 30, 2026Jul 30, 2026

    • course_template

      Public template
      a template for SIB-training course repository (when there is no website attached, otherwise go to https://github.com/sib-swiss/course_website_template )
      Creative Commons Attribution 4.0 International
      •1•0•1•1•Updated Jul 20, 2026Jul 20, 2026

    • containers-snakemake-training

      Public
      Course website "Introduction to Containers and Snakemake for Reproducible Research"
      Shell
      •
      Creative Commons Attribution 4.0 International
      •16•13•0•0•Updated Jul 15, 2026Jul 15, 2026

    • RNAseq-introduction-training

      Public
      Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
      coursernaseq
      coursernaseq
      Creative Commons Attribution 4.0 International
      •9•16•3•0•Updated Jul 14, 2026Jul 14, 2026

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •1.2k•1•0•1•Updated Jul 10, 2026Jul 10, 2026
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