Hi,
I have a problem running scan2 on my data. I tried to run it on pta-wes bam as sc-bam and wgs bam as a bulk. Also I tried to use wes bam as a bulk, but in both cases I got the following error:
"0 somatic candidates detected. SCAN2 requires somatic candidates to have 0 supporting reads in the matched bulk - perhaps your bulk is too closely related to your single cells?"
Hi,
I have a problem running scan2 on my data. I tried to run it on pta-wes bam as sc-bam and wgs bam as a bulk. Also I tried to use wes bam as a bulk, but in both cases I got the following error:
"0 somatic candidates detected. SCAN2 requires somatic candidates to have 0 supporting reads in the matched bulk - perhaps your bulk is too closely related to your single cells?"