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hg38 reference choice

Status: Open.

#19 In parklab/SCAN2;

· anatmela opened on Mar 18, 2026

No mem_mb allocation for phase_chrY

Status: Open.

#18 In parklab/SCAN2;

· alextidd opened on Feb 20, 2026

constructing a panel_meta.csv file correctly

Status: Open.

#17 In parklab/SCAN2;

· AOCuff opened on Dec 4, 2025

not enough memory for gatk3_join

Status: Open.

#15 In parklab/SCAN2;

· alextidd opened on Nov 5, 2025

Documentation uses {mem}, not {mem_mb}

Status: Open.

#14 In parklab/SCAN2;

· alextidd opened on Nov 5, 2025

Bulk bam problem

Status: Open.

#13 In parklab/SCAN2;

· juavasiliadis opened on Aug 13, 2024

Minimum Requirements for Read Depth and Read Length of Input Data

Status: Open.

#12 In parklab/SCAN2;

· HelloYanming opened on Mar 21, 2024

cross-sample panel

Status: Open.

#11 In parklab/SCAN2;

· GruA opened on Jul 19, 2023

SCAN2 for "clonal" sSNVs?

Status: Open.

#9 In parklab/SCAN2;

· proukakis opened on Apr 19, 2023

problem running demo

Status: Open.

#8 In parklab/SCAN2;

· qian0001 opened on Apr 6, 2023

SCAN2 on non-human data

Status: Open.

#7 In parklab/SCAN2;

· RNAseqer opened on Nov 15, 2022

Request to adjust GATK3's memory requirement for an individual job

Status: Open.

#6 In parklab/SCAN2;

· vinayakvsv opened on Nov 5, 2022