Hi,
I noticed when trying to get the pipeline running that I think there is a mistake in the README. You give this example command:
scan2 run --joblimit 100 --drmaa ' -p YOUR_QUEUE_NAME -A YOUR_ACCOUNT -t 10:00 -c {threads} --mem={resources.mem}'
However, in the snakefiles, the memory allocation is encoded by mem_mb, not mem, so this was causing errors.
Just pointing out in case this trips up others.
Thanks!
Hi,
I noticed when trying to get the pipeline running that I think there is a mistake in the README. You give this example command:
However, in the snakefiles, the memory allocation is encoded by
mem_mb, notmem, so this was causing errors.Just pointing out in case this trips up others.
Thanks!