This repository holds sequences, data, and scripts used in sequence and phylogenetic analysis for the publication:
"Variable Sequences in the Archaeal A loop Stabilize the Bacterial Ribosome"
Amos J. Nissley, Petar I. Penev, Zoe L. Watson, Jill F. Banfield, and Jamie H. D. Cate
The script manipulateSILVAtrees.py is used to generate annotation files for iTOL, used in creating figure 1, based on SILVA taxonomy.
