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The resulting bam file has improper sample name

Status: Open.

#24 In pughlab/ConsensusCruncher;

· gavin-peng opened on Nov 23, 2023

IndexError: string index out of range

Status: Open.

#21 In pughlab/ConsensusCruncher;

· robinycfang opened on Dec 12, 2021

barcode overlap checking needs to limit overlap from start

Status: Open.

#16 In pughlab/ConsensusCruncher;

· jinfengzou-uhn opened on Feb 28, 2020

name 'overlap' is not defined in extract_barcodes.py

Status: Open.

#15 In pughlab/ConsensusCruncher;

· jinfengzou-uhn opened on Feb 14, 2020

Add picard command in the ConsensusCruncher.py

Status: Open.

#13 In pughlab/ConsensusCruncher;

· arnavaz opened on Jan 15, 2020

Bam header RG conflict

Status: Open.

#12 In pughlab/ConsensusCruncher;

· arnavaz opened on Jan 15, 2020

The results output is confusing.

Status: Open.

#10 In pughlab/ConsensusCruncher;

· AdaZED opened on Dec 19, 2019

Overlapping barcodes are not clearly well-defined.

Status: Open.

#9 In pughlab/ConsensusCruncher;

· AdaZED opened on Dec 19, 2019

Import modules instead of shelling out to them

Status: Open.

#8 In pughlab/ConsensusCruncher;

· callunity opened on Dec 18, 2019

Allow this library to be installed via pip

Status: Open.

#7 In pughlab/ConsensusCruncher;

· callunity opened on Dec 18, 2019

Clarify link between genome and bedfile

Status: Open.

#6 In pughlab/ConsensusCruncher;

· callunity opened on Dec 18, 2019

Prefer os.subprocess.call() to os.system()

Status: Open.

#5 In pughlab/ConsensusCruncher;

· callunity opened on Dec 18, 2019