Amethyst Initial Version

This version includes the following functionality:

Program	Function	Status
fastqc	read QC	complete
multiqc	read QC	complete
multitrim	read trimming	complete
megahit	assembly	complete
bbnorm	normalization	ON HOLD
bowtie2	assembly coverage analysis	complete
prodigal	gene prediction	complete
prokka	gene annotation	complete
sourmash	diversity analysis- assembly based	complete
maxbin2	binning	complete
checkm	bin/MAG quality	complete
dRep	dereplication of bins/MAGs	complete
GTDB-Tk	taxonomic assignment of bins/MAGs	complete
nonpareil	read-based coverage analysis	backlog
sourmash	diversity analysis- read based	backlog
humann	functional analysis	backlog