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Releases: rqtl/qtl2convert

Version 0.34

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@kbroman kbroman released this 09 Jun 13:40

qtl2convert 0.34 (2026-06-09)

Bug fixes

  • In probs_qtl_to_qtl2(), need to clear a bunch of attributes that previously weren't preserved in R, but in R-devel (4.7) they now are. (Issue #24)

Version 0.32

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@kbroman kbroman released this 30 Apr 17:52

qtl2convert 0.32 (2026-04-30)

Bug fixes

  • Problem in encode_geno() showing up on CRAN: needed to change
    (a==b) to !strcmp(a, b).

Version 0.30

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@kbroman kbroman released this 04 Apr 20:02
cc1f2ca

qtl2convert 0.30 (2024-04-04)

Bug fixes

  • Fixed a bug in probs_doqtl_to_qtl2()

Version 0.28

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@kbroman kbroman released this 11 Jul 14:11

qtl2convert 0.28 (2022-07-11)

  • Maintenance release. Just fixed a typo in the NEWS.md file that results in a Note on CRAN.

Version 0.26

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@kbroman kbroman released this 07 Oct 11:41

qtl2convert 0.26 (2021-10-06)

Minor changes

  • Added function cross2_ril_to_genril() for converting a cross2 object of type "riln" to one of type "genriln" for some n.

Version 0.24

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@kbroman kbroman released this 29 Apr 17:49

Minor changes

  • Added function cross2_do_to_genail8() for converting a cross2 object of type "do" to one of type "genail8". Also present with the alias cross2_do_to_genail().

  • Removed LazyData field from DESCRIPTION file

Bug fixes

  • Needed to fix use of nchar() in encode_geno() as it no longer works properly with data frames.

Version 0.22-7

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@kbroman kbroman released this 01 Jul 11:23
dbd28cc

Made a number of cosmetic changes to get the package on CRAN:

  • Revised package title and description.

  • Revised multi-core tests to never use >2 cores, even locally

  • Revised example for write2csv() to use R's temporary directory

  • Fixed link to DOQTL, which is no longer in bioconductor release

Version 0.22

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@kbroman kbroman released this 22 May 04:15

New features

  • write2csv() now includes an argument row.names. If NULL or NA (the
    default), row names are not written. Otherwise, row names are
    included in the output, and this is taken to be the name of that column.
    (Implements Issue #19.)

Minor changes

  • Have map_df_to_list() ensure that the positions in the output are
    numeric.

  • Add further tests of map_df_to_list()...the case
    marker_column=NULL plus having the wrong marker or position column name.

Bug fixes

  • Fix bug for the case marker_column=NULL.

  • encode_geno() now gives a warning if any allele codes have >1 character.
    (Issue #16)

Version 0.20

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@kbroman kbroman released this 03 Jun 15:41
606a41f
  • Use Markdown for function documentation, throughout