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Pull requests: scverse/scvi-tools

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Pull requests list

[pre-commit.ci] pre-commit autoupdate
#4021 opened Sep 14, 2026 by pre-commit-ci Bot Loading…
1
feat: Extract some methods of DRVI for easier extention + code improvement
#4020 opened Sep 14, 2026 by moinfar Contributor Loading…
1
feat: FCLayers residual and forward kwargs
#4019 opened Sep 14, 2026 by moinfar Contributor Loading…
1
perf: sample cells before the forward pass in get_normalized_expression(n_samples_overall=...)
#4018 opened Sep 14, 2026 by JESUSROYETH Loading…
perf: remove per-minibatch overhead from the data path and the inference forward on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#4017 opened Sep 13, 2026 by JESUSROYETH Loading…
2
build: drop Python 3.12 support, add Python 3.15 support on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3997 opened Sep 6, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
4
Refactor [WIP]: Removed the spatial models from scvi-tools in v1.6 and move them to scVIVA-Tools cuda tests Run test suite on CUDA on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3908 opened Jul 9, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
3
feat: supporting sparse mode in DataSplitter cuda tests Run test suite on CUDA on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3840 opened Jun 11, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
4
feat: scvix reformat on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3827 opened May 28, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
3
feat: First draft of scPoli on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3824 opened May 23, 2026 by canergen Member Loading…
1
feat: scVI-X release on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3823 opened May 22, 2026 by canergen Member Loading…
28
feat: Add RESOLVI graph dataloader integration and benchmark CI on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3798 opened May 5, 2026 by ori-kron-wis Collaborator • Draft
@ori-kron-wis
2
feat: add shared memory for DDP data deduplication on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3754 opened Mar 19, 2026 by ori-kron-wis Collaborator • Draft
@ori-kron-wis
1
Feat: Asymmetric n_layers for encoder/decoder on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3702 opened Feb 8, 2026 by ori-kron-wis Collaborator Loading…
1
@ori-kron-wis
2
model: SENAVAE on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3571 opened Oct 22, 2025 by ori-kron-wis Collaborator Loading…
11
Fixes to pyro model initialisation & sampling [WIP] P1
#2695 opened Apr 7, 2024 by vitkl Contributor Loading…
@martinkim0
9
ProTip! Updated in the last three days: updated:>2026-09-12.