Active crown scott 2001#2

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jkshuman wants to merge 1089 commits into

slevis-lmwg:active_crown_Scott_2001_contdfrom

jkshuman:active_crown_Scott_2001

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Commits on May 4, 2023

refactor copy and dealloc
adrifoster
committed
update for refactor
adrifoster
committed
fix circular dependencies with hydraulics objects
adrifoster
committed
Merge branch 'main' into patch_refactor
adrifoster
committed
converting variables to snake case
glemieux
committed
adjust regridding methods
glemieux
committed

Commits on May 5, 2023

get rid of CMakeLists, only for unit test branch
adrifoster
committed
various fixes and improvements
glemieux
committed
put cohort mod in biogeochem folder
adrifoster
committed
remove chil check in EDSurfaceAlbedoMod
adrifoster
committed
Separated luh2 module and luh2 call script
glemieux
committed

Commits on May 8, 2023

put endrun back
adrifoster
committed
remove allocatable arrays
adrifoster
committed
More updates
glemieux
committed
Update phi1b calculation to use xl directly
glemieux
committed
add abort back
adrifoster
committed
add fragmentation scalar
adrifoster
committed
add shr_sys_abort use
adrifoster
committed
fragmentation scalar
adrifoster
committed
start working on allowing read in of regridder file
glemieux
committed

Commits on May 9, 2023

Commits on May 10, 2023

update for style
adrifoster
committed
Merge branch 'main' into patch_refactor
adrifoster
committed
add target
adrifoster
committed
Add clarifying language per reviewer suggestions
glemieux
committed
Add parameter patch file
glemieux
committed

Commits on May 12, 2023

Adding state correction function
glemieux
committed

Commits on May 15, 2023

get rid of temporary cohort allocation
adrifoster
committed
do_inventory_out off
adrifoster
committed

Commits on May 16, 2023

remove temp cohort
adrifoster
committed
update l2fr definition
adrifoster
committed
dangling pointer
adrifoster
committed
update to target
adrifoster
committed
Add bash script
glemieux
committed
fix crown_damage
adrifoster
committed
update UpdateParamAPI tool
glemieux
committed
update parameter file
glemieux
committed

Commits on May 17, 2023

Commits on May 19, 2023

correct indexing for elongation factor
glemieux
committed

Commits on May 23, 2023

convert YEAR from cftime object to number
glemieux
committed

Commits on May 24, 2023

Changed defaults for drought deciduous.
mpaiao
committed

Commits on May 31, 2023

Commits on Jun 6, 2023

Commits on Jun 8, 2023

Merge branch 'sci.1.65.3_api.25.4.0-branch' into clm-cbalance-merged
rgknox
committed

Commits on Jun 9, 2023

changes in response to Ryan's comments
adamhb
committed

Commits on Jun 12, 2023

Initializing EMA NPP used for nitrogen fixation correctly, also adding restart term
rgknox
committed

Commits on Jun 13, 2023

Commits on Jun 15, 2023

Merge branch 'main' into patch_refactor
adrifoster
committed

Commits on Jun 21, 2023

fixed typo that was preventing a clear error message to be written when pft-indices argument not specified in command line
ckoven
committed

Commits on Jun 28, 2023

Commits on Jul 6, 2023

update seedlingparpatch to handle newly spawned patches
glemieux
committed

Commits on Jul 7, 2023

Commits on Jul 8, 2023

Merge pull request #1050 from NGEET/mpaiao-drgt-decid-patch
glemieux
authored

Commits on Jul 10, 2023

Merge tag 'sci.1.66.1_api.25.5.0' into ema_npp_fix
glemieux
committed

Commits on Jul 11, 2023

Merge pull request #1041 from rgknox/ema_npp_fix
glemieux
authored

Commits on Jul 13, 2023

merge conflicts fix
adrifoster
committed
adding some consistency checks
adrifoster
committed
don't fuse/sort cohorts if in SP
adrifoster
committed

Commits on Jul 17, 2023

Commits on Jul 21, 2023

Commits on Jul 24, 2023

Commits on Jul 26, 2023

Merge branch 'main' into canopy_bug
adrifoster
committed
Fix EDInitMod.F90 initialisation of drought deciduous variables

mpaiao
authored and
adrifoster
committed
fix init error
adrifoster
committed
Remove duplicated init of the drought deciduous local variables

mpaiao
authored and
adrifoster
committed
Merge commit '6d424f467a6236ff24c41be2143244ae0a43b2f8' into patch_refactor
adrifoster
committed
Merge commit '43d5e55480154e4bd487edd8da3f54e9c6bc4c42' into patch_refactor
adrifoster
committed

Commits on Jul 27, 2023

Merge branch 'main' into patch_refactor
adrifoster
committed
removing conditional on ch4 bcs
rgknox
committed
remove default
adrifoster
committed
fix deallocate
adrifoster
committed

Commits on Jul 28, 2023

remove duplicate uses
adrifoster
committed
fix choice range and add shell script input options
glemieux
committed
address comments
adrifoster
committed
Update biogeochem/EDCohortDynamicsMod.F90

adrifoster
and
glemieux
authored

Commits on Jul 31, 2023

Updates to bgc coupling
rgknox
committed

Commits on Aug 2, 2023

Commits on Aug 3, 2023

Merge pull request #1032 from glemieux/tools/fates-luh2_data
glemieux
authored

Commits on Aug 7, 2023

remove duplicate calculation of leaf_c
glemieux
committed

Commits on Aug 8, 2023

Merge pull request #1024 from adrifoster/patch_refactor
glemieux
authored

Commits on Aug 10, 2023

Small syntax updates and accomodations for moving litter flux bc outs
rgknox
committed

Commits on Aug 11, 2023

Merge branch 'main' into clm-cbalance-merged
rgknox
committed

Commits on Aug 14, 2023

put back error tolerance values
adrifoster
committed
update to ensure b4b
adrifoster
committed
Merge branch 'main' into canopy_bug
adrifoster
committed
fix merge conflict
adrifoster
committed
add fates_r8
adrifoster
committed
add missing variable
adrifoster
committed

Commits on Aug 15, 2023

relax tolerance a bit
adrifoster
committed
add error constant
adrifoster
committed

Commits on Aug 18, 2023

update error tolerance
adrifoster
committed
test new fix
adrifoster
committed
update indentation
adrifoster
committed

Commits on Aug 21, 2023

correct units per issue #1047
glemieux
committed

Commits on Aug 22, 2023

Commits on Aug 23, 2023

Merge tag 'sci.1.67.2_api.27.0.0' into cross_grid_seed
glemieux
committed

Commits on Aug 25, 2023

Update PULL_REQUEST_TEMPLATE.md
glemieux
authored

Commits on Aug 26, 2023

fix error with large size initialisation in nocomp mode
JessicaNeedham
committed

Commits on Aug 30, 2023

Commits on Aug 31, 2023

Commits on Sep 1, 2023

refactoring code to accomodate use of mpi_allgatherv in place of a reduction
glemieux
committed

Commits on Sep 5, 2023

updates to pass bag compiler build
glemieux
committed

Commits on Sep 11, 2023

Commits on Sep 20, 2023

move call to PRTDerviedParams up
JessicaNeedham
committed

Commits on Sep 25, 2023

Commits on Sep 27, 2023

Commits on Sep 28, 2023

Merge pull request #1086 from JessicaNeedham/jfn-atkin-lmr-cap
rgknox
authored

Commits on Sep 29, 2023

Merge pull request #1072 from JessicaNeedham/jfn-nocomplargetreeinitfix
rgknox
authored

Commits on Oct 9, 2023

Merge tag 'sci.1.67.4_api.27.0.0' into hitefix
glemieux
committed

Commits on Oct 10, 2023

Commits on Oct 18, 2023

Merge tag 'sci.1.67.5_api.27.0.0' into cross_grid_seed
glemieux
committed

Commits on Oct 20, 2023

Commits on Oct 24, 2023

Merge branch 'main' into active_crown_Scott_2001
adrifoster
committed

Commits on Oct 26, 2023

fix merge conflicts
adrifoster
committed