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Simple quant writer2#1001

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trishorts wants to merge 50 commits into
smith-chem-wisc:masterfrom
trishorts:simpleQuantWriter2
Open

Simple quant writer2#1001
trishorts wants to merge 50 commits into
smith-chem-wisc:masterfrom
trishorts:simpleQuantWriter2

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@trishorts trishorts added the WIP label Dec 18, 2025
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codecov Bot commented Dec 18, 2025

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Codecov Report

❌ Patch coverage is 79.53092% with 192 lines in your changes missing coverage. Please review.
✅ Project coverage is 81.16%. Comparing base (f3c45fa) to head (138406a).
⚠️ Report is 51 commits behind head on master.

Files with missing lines Patch % Lines
mzLib/Quantification/QuantificationEngine.cs 0.00% 87 Missing ⚠️
mzLib/Quantification/QuantMatrix.cs 55.17% 23 Missing and 3 partials ⚠️
mzLib/Omics/BioPolymerGroup/BioPolymerGroup.cs 95.52% 7 Missing and 15 partials ⚠️
mzLib/Quantification/QuantificationWriter.cs 75.75% 14 Missing and 2 partials ⚠️
mzLib/Quantification/Interfaces/IRollUpStrategy.cs 0.00% 11 Missing ⚠️
...cation/Strategies/Normalization/NoNormalization.cs 0.00% 10 Missing ⚠️
...zLib/Quantification/Strategies/RollUp/SumRollUp.cs 75.00% 7 Missing and 2 partials ⚠️
mzLib/Quantification/QuantificationParameters.cs 0.00% 6 Missing ⚠️
...tification/Strategies/RollUp/RollUpStrategyBase.cs 87.50% 2 Missing and 1 partial ⚠️
mzLib/Quantification/QuantificationResults.cs 0.00% 2 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #1001      +/-   ##
==========================================
- Coverage   81.20%   81.16%   -0.05%     
==========================================
  Files         279      291      +12     
  Lines       39563    40496     +933     
  Branches     4363     4508     +145     
==========================================
+ Hits        32128    32869     +741     
- Misses       6668     6837     +169     
- Partials      767      790      +23     
Files with missing lines Coverage Δ
...etry/ExperimentalDesign/IsobaricQuantSampleInfo.cs 96.55% <ø> (ø)
mzLib/MassSpectrometry/SpectraFileInfo.cs 95.94% <100.00%> (ø)
mzLib/Omics/BaseSpectralMatch.cs 100.00% <100.00%> (ø)
mzLib/Omics/BioPolymerGroup/IBioPolymerGroup.cs 100.00% <100.00%> (ø)
mzLib/Quantification/QuantificationResults.cs 0.00% <0.00%> (ø)
...tification/Strategies/RollUp/RollUpStrategyBase.cs 87.50% <87.50%> (ø)
mzLib/Quantification/QuantificationParameters.cs 0.00% <0.00%> (ø)
...zLib/Quantification/Strategies/RollUp/SumRollUp.cs 75.00% <75.00%> (ø)
...cation/Strategies/Normalization/NoNormalization.cs 0.00% <0.00%> (ø)
mzLib/Quantification/Interfaces/IRollUpStrategy.cs 0.00% <0.00%> (ø)
... and 4 more
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