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smith-chem-wisc / mzLib Public

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Professor lupin#1038

Open

trishorts wants to merge 17 commits into

smith-chem-wisc:mastersmith-chem-wisc/mzLib:masterfrom

trishorts:professorLupintrishorts/mzLib:professorLupinCopy head branch name to clipboard

Conversation Commits17 (17)Checks Files changed

Open

Professor lupin#1038
trishorts wants to merge 17 commits into
smith-chem-wisc:masterfrom
trishorts:professorLupin

Commits

Commits on Mar 24, 2026

loopy
trishorts
committed
CircularPeptideWithSetMods FragmentInternally production code and tests
trishorts
committed
loopFragger
trishorts
committed

Commits on Mar 25, 2026

fix protein digest
trishorts
committed
test circular peptide with set mods
trishorts
committed
works on real data
trishorts
committed

Commits on Mar 26, 2026

internal code review
trishorts
committed
merge upstream
trishorts
committed
fix override
trishorts
committed
load xml and xml with mods as circular protein
trishorts
committed
Merge branch 'master' into professorLupin
nbollis
authored

Commits on Mar 27, 2026

get digestion indicies correctly
trishorts
committed
Merge branch 'professorLupin' of https://github.com/trishorts/mzLib into professorLupin
trishorts
committed

Commits on Jun 2, 2026

chore: merge master into professorLupin; adopt OpenMcdf 3.1.3 / 2.3.1

trishorts
and
claude
committed
fix: preserve localized PTMs on circular wrap-around and full-ring products

trishorts
and
claude
committed
test: regression tests for circular localized-PTM digestion fixes

trishorts
and
claude
committed
test(circular): cover terminal-mod guards and fragment caching

trishorts
and
claude
committed

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