Update Handling of Sequence Variants (Part 8): Point LoadRnaXML to new VariantApplicationMethod#972

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trishorts wants to merge 45 commits into

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trishorts:rnaDbLoader_xmlUpdateOne

Commits on Oct 24, 2025

Commits on Oct 25, 2025

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MICHAEL SHORTREED
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new variant application constructor with more accurate parameters and names
MICHAEL SHORTREED
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new VariantApplication method with added maxVariantsPerIsoform
MICHAEL SHORTREED
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new methods to evaluate validity of sequence variants
MICHAEL SHORTREED
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interface proteindbloader with new code in variant application
MICHAEL SHORTREED
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remove commented out code
MICHAEL SHORTREED
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breaking change we need to resolve ambiguity
MICHAEL SHORTREED
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resolved ambiguity but some tests in mm may fail if they expected variant proteins when they dont explicitly call for them
MICHAEL SHORTREED
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Commits on Oct 26, 2025

add maxVariantsPerIsoform to rna dbloader and call new get variant biopolymer
MICHAEL SHORTREED
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