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8 changes: 8 additions & 0 deletions README.md
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Expand Up @@ -50,6 +50,14 @@ Run the workflow with:
snakemake --cores 2 --sdm conda apptainer --directory .test
```

## The "profiles" Directory
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When developing on a cluster or cloud instance, please include a "profiles" directory:

`profiles/<cluster or cloud name>/config.yaml`

This configuration file should contain the workflow profile with its resource specification for a particular execution environment (cluster or cloud). You may include a readme file next to point out pitfalls or other aspects worth a user's consideration.
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## Authors

- Firstname Lastname
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9 changes: 9 additions & 0 deletions profiles/README.txt
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A 'profiles' directory might contain workflow resource configuration for a particular cluster or cloud instance.

We encourage to include a profile for your use case as:

`profiles/<your cluster or cloud instance>/config.yaml`

You may include a readme file next to the config.yaml file to point out pitfalls or other things to consider.
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We welcome pull requests for 3rd-party workflows you are working with to include such a profile! It may also be necessary to occasionally label certain rules of a particular workflow with the `localrules: <rule 1>, <rule 2>, ...` directive when workflow developers focused on server execution during development, e.g., plotting and download rules.
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