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ENH accelarate dicodile#59

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hndgzkn wants to merge 28 commits into
tomMoral:mainfrom
hndgzkn:ENH_accelarate_dicodile
Open

ENH accelarate dicodile#59
hndgzkn wants to merge 28 commits into
tomMoral:mainfrom
hndgzkn:ENH_accelarate_dicodile

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@hndgzkn

@hndgzkn hndgzkn commented Jan 3, 2023

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Improves dicodile's performance:

  • Update signatures of functions adding seg_bounds and seg_inner_bounds to avoid unnecessary calls to Segmentation.get_seg_bounds.
  • Separates worker and local segmentation classes.

@hndgzkn hndgzkn changed the title Enh accelarate dicodile ENH accelarate dicodile Jan 3, 2023
@codecov

codecov Bot commented Jan 3, 2023

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Codecov Report

❌ Patch coverage is 95.16729% with 13 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.60%. Comparing base (8e5a75a) to head (24d414b).
⚠️ Report is 2 commits behind head on main.

Files with missing lines Patch % Lines
dicodile/utils/segmentation.py 95.80% 6 Missing ⚠️
dicodile/workers/dicod_worker.py 89.36% 5 Missing ⚠️
dicodile/update_z/coordinate_descent.py 80.00% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #59      +/-   ##
==========================================
+ Coverage   78.29%   78.60%   +0.30%     
==========================================
  Files          43       43              
  Lines        2856     2888      +32     
==========================================
+ Hits         2236     2270      +34     
+ Misses        620      618       -2     
Flag Coverage Δ
unittests 78.60% <95.16%> (+0.30%) ⬆️

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@hndgzkn hndgzkn force-pushed the ENH_accelarate_dicodile branch from 7c12a21 to 24d414b Compare January 6, 2023 13:33
@hndgzkn hndgzkn marked this pull request as ready for review January 10, 2023 13:13
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