Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)
FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
Making Protein Language Modeling Accessible to All Biologists
Protein Language Model
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
Inference code for PoET: A generative model of protein families as sequences-of-sequences
ProtFlash: A lightweight protein language model
Directed evolution of proteins in sequence space with gradients
Official implementation of μProtein -- Accelerating protein engineering with fitness landscape modeling and reinforcement learning
Detection of remote homology by comparison of protein language model representations
Exploring Evolution-aware & free protein language models as protein function predictors
Protein language model trained on coding DNA
PaccMann models for protein language modeling
SPECTRA: Spectral framework for evaluation of biomedical AI models
AutoML system for building trustworthy peptide bioactivity predictors
LatentDE: Latent-based Directed Evolution for Protein Sequence Design
🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Modeling 2024).
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