Merge remote-tracking branch 'refs/remotes/origin/nwiltsie_sanitize_hotpaths' into nwiltsie_sanitize_hotpaths

sorelfitzgibbon · sorelfitzgibbon · commit 4e5c3d56b7ed · 2025-09-08T12:56:48.000-07:00
diff --git a/test/configtest-F32.json b/test/configtest-F32.json
@@ -522,13 +522,6 @@
       "enabled": true,
       "file": "/tmp/outputs/call-sSNV-VER.SI.ON/tumor-id/log-call-sSNV-VER.SI.ON-19970704T165655Z/nextflow-log/trace.txt"
     },
-    "valid_algorithms": [
-      "somaticsniper",
-      "strelka2",
-      "mutect2",
-      "muse",
-      "deepsomatic"
-    ],
     "workDir": "/scratch/8543"
   }
 }

Original file line number	Diff line number	Diff line change
`@@ -522,13 +522,6 @@`
`522`	`522`	`"enabled": true,`
`523`	`523`	`"file": "/tmp/outputs/call-sSNV-VER.SI.ON/tumor-id/log-call-sSNV-VER.SI.ON-19970704T165655Z/nextflow-log/trace.txt"`
`524`	`524`	`},`
`525`		`- "valid_algorithms": [`
`526`		`- "somaticsniper",`
`527`		`- "strelka2",`
`528`		`- "mutect2",`
`529`		`- "muse",`
`530`		`- "deepsomatic"`
`531`		`- ],`
`532`	`525`	`"workDir": "/scratch/8543"`
`533`	`526`	`}`
`534`	`527`	`}`